For multiple ranked input lists (full or partial) representing the same set of N objects, the package TopKLists offers (1) statistical inference on the lengths of informative top-k lists, (2) stochastic aggregation of full or partial lists, and (3) graphical tools for the statistical exploration of input lists, and for the visualization of aggregation results.

Author | Michael G. Schimek, Eva Budinska, Jie Ding, Karl G. Kugler, Vendula Svendova, Shili Lin |

Date of publication | 2015-11-13 11:47:47 |

Maintainer | Michael G. Schimek <michael.schimek@medunigraz.at> |

License | LGPL-3 |

Version | 1.0.6 |

http://topklists.r-forge.r-project.org |

**aggmap:** Aggregation map for the integration of truncated lists

**borda:** Borda based rank aggregation

**borda.plot:** Plot Borda's scores against ranks

**breast:** Sample data from breast cancer expression

**calculate.maxK:** The main function for TopKInference

**CEMC:** CEMC based rank aggregation

**compute.stream:** Calculates point of degeneration j0 into noise of the Idata,...

**deltaplot:** An exploratory plot of discordance for delta selection.

**geo.mean:** Calculate the geometric mean

**init.p:** Initialization method for probabilities

**j0.multi:** Function returning an overall point j0 of degeneration into...

**kendall2Lists:** Calculate modified Kendall's tau distance

**kendallMLists:** KendallMLists

**kendall.plot:** Plot of the Kendall Criterion values

**l2norm:** Calculate the L2 norm

**MC:** Markov chain based rank aggregation

**mc.plot:** Plot of the ordered stationary probabilities

**mc.ranks:** MC based rank aggregation

**prepare.idata:** Prepare Idata vector of 0's and 1's

**spearman:** Modified Spearman's footrule distance

**TopKListsGUI:** TopKListsGUI for inference and visualization

**TopKLists-package:** Inference, aggregation and visualization for top-_k_ ranked...

**TopKSample:** Sampler to generate N top-k lists according to p

**TopKSpaceSampleInput:** Sample input for TopKSpace functions

**trans.matrix:** Compute transition matrices

TopKLists

TopKLists/inst

TopKLists/inst/CITATION

TopKLists/inst/doc

TopKLists/inst/doc/TopKLists.R

TopKLists/inst/doc/TopKLists.Rnw

TopKLists/inst/doc/TopKLists.pdf

TopKLists/src

TopKLists/src/TopK.c

TopKLists/NAMESPACE

TopKLists/NEWS

TopKLists/data

TopKLists/data/TopKSpaceSampleInput.rda

TopKLists/data/breast.rda

TopKLists/data/datalist

TopKLists/R

TopKLists/R/TopKGraphics.R
TopKLists/R/TopKCEMC.R
TopKLists/R/TopKSpace.R
TopKLists/R/TopKInference.R
TopKLists/vignettes

TopKLists/vignettes/TopKLists_workflow.pdf

TopKLists/vignettes/TopKListsGUI-1.png

TopKLists/vignettes/TopKLists.Rnw

TopKLists/vignettes/venndiagram.png

TopKLists/vignettes/aggmap.png

TopKLists/vignettes/TopKInferenceFlowmap.pdf

TopKLists/vignettes/summarytable.png

TopKLists/vignettes/TopKSpaceSchema.pdf

TopKLists/vignettes/TopKListsGUI-1-DeltaSlider.png

TopKLists/vignettes/TopKListsGUI-1-Arguments.png

TopKLists/MD5

TopKLists/build

TopKLists/build/vignette.rds

TopKLists/DESCRIPTION

TopKLists/man

TopKLists/man/borda.plot.Rd
TopKLists/man/borda.Rd
TopKLists/man/deltaplot.Rd
TopKLists/man/calculate.maxK.Rd
TopKLists/man/kendall.plot.Rd
TopKLists/man/kendallMLists.Rd
TopKLists/man/TopKLists-package.Rd
TopKLists/man/geo.mean.Rd
TopKLists/man/mc.plot.Rd
TopKLists/man/j0.multi.Rd
TopKLists/man/prepare.idata.Rd
TopKLists/man/l2norm.Rd
TopKLists/man/breast.Rd
TopKLists/man/aggmap.Rd
TopKLists/man/TopKSpaceSampleInput.Rd
TopKLists/man/MC.Rd
TopKLists/man/CEMC.Rd
TopKLists/man/TopKListsGUI.Rd
TopKLists/man/kendall2Lists.Rd
TopKLists/man/init.p.Rd
TopKLists/man/compute.stream.Rd
TopKLists/man/trans.matrix.Rd
TopKLists/man/mc.ranks.Rd
TopKLists/man/spearman.Rd
TopKLists/man/TopKSample.Rd
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