TreatmentPatternsResults: TreatmentPatternsResults Class

In TreatmentPatterns: Analyzes Real-World Treatment Patterns of a Study Population of Interest

TreatmentPatternsResults Class

Description

Houses the results of a TreatmentPatterns analysis. Each field corresponds to a file. Plotting methods are provided.

Active bindings

attrition

(data.frame)

metadata

(data.frame)

treatment_pathways

(data.frame)

summary_event_duration

(data.frame)

counts_age

(data.frame)

counts_sex

(data.frame)

counts_year

(data.frame)

cdm_source_info

(data.frame)

analyses

(data.frame)

arguments

(list)

Methods

Public methods

• TreatmentPatternsResults$new()

• TreatmentPatternsResults$saveAsZip()

• TreatmentPatternsResults$saveAsCsv()

• TreatmentPatternsResults$uploadResultsToDb()

• TreatmentPatternsResults$load()

• TreatmentPatternsResults$plotSunburst()

• TreatmentPatternsResults$plotSankey()

• TreatmentPatternsResults$plotEventDuration()

• TreatmentPatternsResults$clone()

---

Method new()

Initializer method

Usage

TreatmentPatternsResults$new(
  attrition = NULL,
  metadata = NULL,
  treatmentPathways = NULL,
  summaryEventDuration = NULL,
  countsAge = NULL,
  countsSex = NULL,
  countsYear = NULL,
  cdmSourceInfo = NULL,
  analyses = NULL,
  arguments = NULL,
  filePath = NULL
)

Arguments

attrition

(data.frame) attrition result.

metadata

(⁠data.frame)⁠) metadata result.

treatmentPathways

(⁠data.frame)⁠) treatmentPathways result.

summaryEventDuration

(⁠data.frame)⁠) summaryEventDuration result.

countsAge

(⁠data.frame)⁠) countsAge result.

countsSex

(⁠data.frame)⁠) countsSex result.

countsYear

(⁠data.frame)⁠) countsYear result.

cdmSourceInfo

(data.frame) cdmSourceInfo result.

analyses

(data.frame) Analyses result.

arguments

(list) Named list of arguments used.

filePath

(character) File path to either a directory or zip-file, containing the csv-files.

---

Method saveAsZip()

Save the results as a zip-file.

Usage

TreatmentPatternsResults$saveAsZip(path, name, verbose = TRUE)

Arguments

path

(character(1)) Path to write to.

name

(character(1)) File name.

verbose

(logical: TRUE) Verbose messaging.

Returns

self

---

Method saveAsCsv()

Save the results as csv-files.

Usage

TreatmentPatternsResults$saveAsCsv(path, verbose = TRUE)

Arguments

path

(character(1)) Path to write to.

verbose

(logical: TRUE) Verbose messaging.

Returns

self

---

Method uploadResultsToDb()

Upload results to a resultsDatabase using ResultModelManager.

Usage

TreatmentPatternsResults$uploadResultsToDb(
  connectionDetails,
  schema,
  prefix = "tp_",
  overwrite = TRUE,
  purgeSiteDataBeforeUploading = FALSE
)

Arguments

connectionDetails

(ConnectionDetails) ConnectionDetails object from DatabaseConnector.

schema

(character(1)) Schema to write tables to.

prefix

(character(1): "tp_") Table prefix.

overwrite

(logical(1): TRUE) Should tables be overwritten?

purgeSiteDataBeforeUploading

(logical: FALSE) Should site data be purged before uploading?

Returns

self

---

Method load()

Load data from files.

Usage

TreatmentPatternsResults$load(filePath)

Arguments

filePath

(character(1)) Path to a directory or zip-file containing the result csv-files.

Returns

self

---

Method plotSunburst()

Wrapper for TreatmentPatterns::createSunburstPlot(), but with data filtering step.

Usage

TreatmentPatternsResults$plotSunburst(
  age = "all",
  sex = "all",
  indexYear = "all",
  nonePaths = FALSE,
  ...
)

Arguments

age

(character(1)) Age group.

sex

(character(1)) Sex group.

indexYear

(character(1)) Index year group.

nonePaths

(logical(1)) Should None paths be included?

...

Parameters for TreatmentPatterns::createSunburstPlot()

Returns

htmlwidget

---

Method plotSankey()

Wrapper for TreatmentPatterns::createSankeyDiagram(), but with data filtering step.

Usage

TreatmentPatternsResults$plotSankey(
  age = "all",
  sex = "all",
  indexYear = "all",
  nonePaths = FALSE,
  ...
)

Arguments

age

(character(1)) Age group.

sex

(character(1)) Sex group.

indexYear

(character(1)) Index year group.

nonePaths

(logical(1)) Should None paths be included?

...

Parameters for TreatmentPatterns::createSankeyDiagram()

Returns

htmlwidget

---

Method plotEventDuration()

Wrapper for TreatmentPatterns::plotEventDuration().

Usage

TreatmentPatternsResults$plotEventDuration(...)

Arguments

...

Parameters for TreatmentPatterns::plotEventDuration()

Returns

ggplot

---

Method clone()

The objects of this class are cloneable with this method.

Usage

TreatmentPatternsResults$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.

TreatmentPatterns documentation built on April 16, 2025, 5:11 p.m.