TreatmentSelection: Evaluate Treatment Selection Biomarkers

A suite of descriptive and inferential methods designed to evaluate one or more biomarkers for their ability to guide patient treatment recommendations. Package includes functions to assess the calibration of risk models; and plot, evaluate, and compare markers.

AuthorMarshall Brown and Holly Janes
Date of publication2017-02-09 10:18:33
MaintainerMarshall Brown <mdbrown@fhcrc.org>
LicenseGPL-2
Version2.0.3
http://mdbrown.github.io/TreatmentSelection/

View on CRAN

Functions

calibrate Man page
calibrate.trtsel Man page
compare Man page
compare.trtsel Man page
evaluate Man page
evaluate.trtsel Man page
is.trtsel Man page
plot Man page
plot.trtsel Man page
print.calibrate.trtsel Man page
print.compare.trtsel Man page
print.eval.trtsel Man page
print.trtsel Man page
print.trtsel_summary_measures Man page
surv_tsdata Man page
TreatmentSelection Man page
TreatmentSelection-package Man page
trtsel Man page
trtsel_measures Man page
tsdata Man page
tsdata_cc Man page
tsdata_scc Man page

Files

TreatmentSelection
TreatmentSelection/inst
TreatmentSelection/inst/check.R
TreatmentSelection/inst/todo.Rmd
TreatmentSelection/inst/example
TreatmentSelection/inst/example/example.R
TreatmentSelection/inst/example/tutorial.md
TreatmentSelection/inst/example/TreatmentSelectionExample.R
TreatmentSelection/inst/example/checkSubCohortEstimation.R
TreatmentSelection/inst/example/tutorial.html
TreatmentSelection/inst/example/figure
TreatmentSelection/inst/example/figure/unnamed-chunk-14.png
TreatmentSelection/inst/example/figure/unnamed-chunk-15.png
TreatmentSelection/inst/example/figure/unnamed-chunk-16.png
TreatmentSelection/inst/example/figure/unnamed-chunk-6.png
TreatmentSelection/inst/example/figure/unnamed-chunk-7.png
TreatmentSelection/inst/example/figure/unnamed-chunk-18.png
TreatmentSelection/inst/example/figure/unnamed-chunk-9.png
TreatmentSelection/inst/example/figure/unnamed-chunk-10.png
TreatmentSelection/inst/example/tutorial.Rmd
TreatmentSelection/inst/example/tutorial_reference.html
TreatmentSelection/NAMESPACE
TreatmentSelection/NEWS
TreatmentSelection/data
TreatmentSelection/data/tsdata_scc.rda
TreatmentSelection/data/surv_tsdata.rda
TreatmentSelection/data/tsdata_cc.rda
TreatmentSelection/data/tsdata.rda
TreatmentSelection/R
TreatmentSelection/R/evaluate.trtsel.R TreatmentSelection/R/myplotcompare.trtsel.R TreatmentSelection/R/EventRateVec.R TreatmentSelection/R/get.risk.R TreatmentSelection/R/one.boot.plot.R TreatmentSelection/R/calibrate.trtsel.R TreatmentSelection/R/TreatmentSelection-package.R TreatmentSelection/R/get.summary.measures.R TreatmentSelection/R/print.trtsel.R TreatmentSelection/R/boot.sample.R TreatmentSelection/R/get.plot.ci.R TreatmentSelection/R/get.F.R TreatmentSelection/R/one.boot.compare.R TreatmentSelection/R/timetoevent_subroutines.R TreatmentSelection/R/trtsel.boot.R TreatmentSelection/R/one.boot.eval.R TreatmentSelection/R/predcurvePLOT.R TreatmentSelection/R/plot.trtsel.R TreatmentSelection/R/get.coef.R TreatmentSelection/R/trteffectPLOT.R TreatmentSelection/R/estimate_measures.R TreatmentSelection/R/trtsel.R TreatmentSelection/R/subroutines.R TreatmentSelection/R/CDFdeltaPLOT.R TreatmentSelection/R/SelectionImpactPLOT_gg.R TreatmentSelection/R/is.trtsel.R TreatmentSelection/R/test.Null.R TreatmentSelection/R/compare.trtsel.R
TreatmentSelection/README.md
TreatmentSelection/MD5
TreatmentSelection/DESCRIPTION
TreatmentSelection/man
TreatmentSelection/man/surv_tsdata.Rd TreatmentSelection/man/print.calibrate.trtsel.Rd TreatmentSelection/man/TreatmentSelection-package.Rd TreatmentSelection/man/print.trtsel_summary_measures.Rd TreatmentSelection/man/print.eval.trtsel.Rd TreatmentSelection/man/plot.trtsel.Rd TreatmentSelection/man/compare.trtsel.Rd TreatmentSelection/man/tsdata_scc.Rd TreatmentSelection/man/calibrate.trtsel.Rd TreatmentSelection/man/tsdata_cc.Rd TreatmentSelection/man/print.trtsel.Rd TreatmentSelection/man/compare.Rd TreatmentSelection/man/is.trtsel.Rd TreatmentSelection/man/tsdata.Rd TreatmentSelection/man/trtsel_measures.Rd TreatmentSelection/man/trtsel.Rd TreatmentSelection/man/print.compare.trtsel.Rd TreatmentSelection/man/evaluate.trtsel.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.