TreatmentSelection: Evaluate Treatment Selection Biomarkers

Evaluate the performance of markers used to guide treatment selection decisions. Package includes functions to plot risk curves, evaluate marker performance, assess model calibration, and compare markers.

AuthorMarshall Brown and Holly Janes
Date of publication2016-01-15 22:43:53
MaintainerMarshall Brown <mdbrown@fhcrc.org>
LicenseGPL-2
Version1.2.0
http://mdbrown.github.io/TreatmentSelection/

View on CRAN

Files in this package

TreatmentSelection
TreatmentSelection/inst
TreatmentSelection/inst/example
TreatmentSelection/inst/example/example.R
TreatmentSelection/inst/example/tutorial.md
TreatmentSelection/inst/example/TreatmentSelectionExample.R
TreatmentSelection/inst/example/checkSubCohortEstimation.R
TreatmentSelection/inst/example/tutorial.html
TreatmentSelection/inst/example/figure
TreatmentSelection/inst/example/figure/unnamed-chunk-14.png
TreatmentSelection/inst/example/figure/unnamed-chunk-15.png
TreatmentSelection/inst/example/figure/unnamed-chunk-16.png
TreatmentSelection/inst/example/figure/unnamed-chunk-6.png
TreatmentSelection/inst/example/figure/unnamed-chunk-7.png
TreatmentSelection/inst/example/figure/unnamed-chunk-18.png
TreatmentSelection/inst/example/figure/unnamed-chunk-9.png
TreatmentSelection/inst/example/figure/unnamed-chunk-10.png
TreatmentSelection/inst/example/tutorial.Rmd
TreatmentSelection/NAMESPACE
TreatmentSelection/NEWS
TreatmentSelection/data
TreatmentSelection/data/tsdata_scc.rda
TreatmentSelection/data/tsdata_cc.rda
TreatmentSelection/data/tsdata.rda
TreatmentSelection/R
TreatmentSelection/R/myplotcompare.trtsel.R TreatmentSelection/R/one.boot.plot.compare.R TreatmentSelection/R/boot.sample.stratified.case.control.R TreatmentSelection/R/predcurvePLOT_gg.R TreatmentSelection/R/get.risk.t0.R TreatmentSelection/R/logit.R TreatmentSelection/R/get.F.stratified.case.control.R TreatmentSelection/R/EventRateVec.R TreatmentSelection/R/print.calibrate.trtsel.R TreatmentSelection/R/one.boot.plot.R TreatmentSelection/R/sum.I.R TreatmentSelection/R/calibrate.trtsel.R TreatmentSelection/R/get.plot.ci_disc.R TreatmentSelection/R/get.summary.measures.stratified.case.control.R TreatmentSelection/R/get.summary.measures.cohort.R TreatmentSelection/R/get.summary.measures.case.control.R TreatmentSelection/R/get.F.cohort.R TreatmentSelection/R/boot.sample.case.control.R TreatmentSelection/R/print.trtsel.R TreatmentSelection/R/predcurvePLOT_gg_disc.R TreatmentSelection/R/test.Null.warning.R TreatmentSelection/R/CDFdeltaPLOT_gg_disc.R TreatmentSelection/R/print.compare.trtsel.R TreatmentSelection/R/get.plot.ci.R TreatmentSelection/R/trteffectPLOT_gg_disc.R TreatmentSelection/R/one.boot.compare.R TreatmentSelection/R/boot.sample.cohort.R TreatmentSelection/R/CDFdeltaPLOT_gg.R TreatmentSelection/R/trtsel.boot.R TreatmentSelection/R/one.boot.eval.R TreatmentSelection/R/predcurvePLOT.R TreatmentSelection/R/logit.one.R TreatmentSelection/R/expit.R TreatmentSelection/R/get.F.case.control.R TreatmentSelection/R/trteffectPLOT_gg.R TreatmentSelection/R/plot.trtsel.R TreatmentSelection/R/one.boot.plot_disc.R TreatmentSelection/R/Theta.cutoff.R TreatmentSelection/R/shade.R TreatmentSelection/R/myplotcompare.trtsel_disc.R TreatmentSelection/R/trteffectPLOTcompare_gg.R TreatmentSelection/R/cover.R TreatmentSelection/R/get.risk.t1.R TreatmentSelection/R/get.coef.R TreatmentSelection/R/trteffectPLOT.R TreatmentSelection/R/print.eval.trtsel.R TreatmentSelection/R/trtsel.R TreatmentSelection/R/shade_gg.R TreatmentSelection/R/CDFdeltaPLOT.R TreatmentSelection/R/SelectionImpactPLOT_gg.R TreatmentSelection/R/is.trtsel.R TreatmentSelection/R/test.Null.R TreatmentSelection/R/trteffectPLOTcompare_gg_disc.R TreatmentSelection/R/compare.trtsel.R TreatmentSelection/R/eval.trtsel.R
TreatmentSelection/README.md
TreatmentSelection/MD5
TreatmentSelection/DESCRIPTION
TreatmentSelection/man
TreatmentSelection/man/print.calibrate.trtsel.Rd TreatmentSelection/man/eval.trtsel.Rd TreatmentSelection/man/TreatmentSelection-package.Rd TreatmentSelection/man/print.eval.trtsel.Rd TreatmentSelection/man/plot.trtsel.Rd
TreatmentSelection/man/print.compare.trtsel.rd
TreatmentSelection/man/compare.trtsel.Rd TreatmentSelection/man/tsdata_scc.Rd TreatmentSelection/man/calibrate.trtsel.Rd TreatmentSelection/man/tsdata_cc.Rd TreatmentSelection/man/print.trtsel.Rd TreatmentSelection/man/is.trtsel.Rd TreatmentSelection/man/tsdata.Rd TreatmentSelection/man/trtsel.Rd

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