TreatmentSelection: Evaluate Treatment Selection Biomarkers

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Evaluate the performance of markers used to guide treatment selection decisions. Package includes functions to plot risk curves, evaluate marker performance, assess model calibration, and compare markers.

Author
Marshall Brown and Holly Janes
Date of publication
2016-01-15 22:43:53
Maintainer
Marshall Brown <mdbrown@fhcrc.org>
License
GPL-2
Version
1.2.0
URLs

View on CRAN

Man pages

calibrate.trtsel
assess model calibration of a trtsel object
compare.trtsel
compare the performance of two treatment selection markers
eval.trtsel
evaluate the performance of a marker used for treatment...
is.trtsel
is x a trtsel object?
plot.trtsel
plot risk curves, treatment effect curves or cdf of risk for...
print.calibrate.trtsel
print a trtsel object
print.eval.trtsel
print a trtsel object
print.trtsel
print a trtsel object
TreatmentSelection-package
Evaluate markers used to guide patient treatment selection...
trtsel
create a trtsel object
tsdata
sample data for R package TreatmentSelection
tsdata_cc
sample nested case-control data for R package...
tsdata_scc
sample stratified nested case-control data for R package...

Files in this package

TreatmentSelection
TreatmentSelection/inst
TreatmentSelection/inst/example
TreatmentSelection/inst/example/example.R
TreatmentSelection/inst/example/tutorial.md
TreatmentSelection/inst/example/TreatmentSelectionExample.R
TreatmentSelection/inst/example/checkSubCohortEstimation.R
TreatmentSelection/inst/example/tutorial.html
TreatmentSelection/inst/example/figure
TreatmentSelection/inst/example/figure/unnamed-chunk-14.png
TreatmentSelection/inst/example/figure/unnamed-chunk-15.png
TreatmentSelection/inst/example/figure/unnamed-chunk-16.png
TreatmentSelection/inst/example/figure/unnamed-chunk-6.png
TreatmentSelection/inst/example/figure/unnamed-chunk-7.png
TreatmentSelection/inst/example/figure/unnamed-chunk-18.png
TreatmentSelection/inst/example/figure/unnamed-chunk-9.png
TreatmentSelection/inst/example/figure/unnamed-chunk-10.png
TreatmentSelection/inst/example/tutorial.Rmd
TreatmentSelection/NAMESPACE
TreatmentSelection/NEWS
TreatmentSelection/data
TreatmentSelection/data/tsdata_scc.rda
TreatmentSelection/data/tsdata_cc.rda
TreatmentSelection/data/tsdata.rda
TreatmentSelection/R
TreatmentSelection/R/myplotcompare.trtsel.R
TreatmentSelection/R/one.boot.plot.compare.R
TreatmentSelection/R/boot.sample.stratified.case.control.R
TreatmentSelection/R/predcurvePLOT_gg.R
TreatmentSelection/R/get.risk.t0.R
TreatmentSelection/R/logit.R
TreatmentSelection/R/get.F.stratified.case.control.R
TreatmentSelection/R/EventRateVec.R
TreatmentSelection/R/print.calibrate.trtsel.R
TreatmentSelection/R/one.boot.plot.R
TreatmentSelection/R/sum.I.R
TreatmentSelection/R/calibrate.trtsel.R
TreatmentSelection/R/get.plot.ci_disc.R
TreatmentSelection/R/get.summary.measures.stratified.case.control.R
TreatmentSelection/R/get.summary.measures.cohort.R
TreatmentSelection/R/get.summary.measures.case.control.R
TreatmentSelection/R/get.F.cohort.R
TreatmentSelection/R/boot.sample.case.control.R
TreatmentSelection/R/print.trtsel.R
TreatmentSelection/R/predcurvePLOT_gg_disc.R
TreatmentSelection/R/test.Null.warning.R
TreatmentSelection/R/CDFdeltaPLOT_gg_disc.R
TreatmentSelection/R/print.compare.trtsel.R
TreatmentSelection/R/get.plot.ci.R
TreatmentSelection/R/trteffectPLOT_gg_disc.R
TreatmentSelection/R/one.boot.compare.R
TreatmentSelection/R/boot.sample.cohort.R
TreatmentSelection/R/CDFdeltaPLOT_gg.R
TreatmentSelection/R/trtsel.boot.R
TreatmentSelection/R/one.boot.eval.R
TreatmentSelection/R/predcurvePLOT.R
TreatmentSelection/R/logit.one.R
TreatmentSelection/R/expit.R
TreatmentSelection/R/get.F.case.control.R
TreatmentSelection/R/trteffectPLOT_gg.R
TreatmentSelection/R/plot.trtsel.R
TreatmentSelection/R/one.boot.plot_disc.R
TreatmentSelection/R/Theta.cutoff.R
TreatmentSelection/R/shade.R
TreatmentSelection/R/myplotcompare.trtsel_disc.R
TreatmentSelection/R/trteffectPLOTcompare_gg.R
TreatmentSelection/R/cover.R
TreatmentSelection/R/get.risk.t1.R
TreatmentSelection/R/get.coef.R
TreatmentSelection/R/trteffectPLOT.R
TreatmentSelection/R/print.eval.trtsel.R
TreatmentSelection/R/trtsel.R
TreatmentSelection/R/shade_gg.R
TreatmentSelection/R/CDFdeltaPLOT.R
TreatmentSelection/R/SelectionImpactPLOT_gg.R
TreatmentSelection/R/is.trtsel.R
TreatmentSelection/R/test.Null.R
TreatmentSelection/R/trteffectPLOTcompare_gg_disc.R
TreatmentSelection/R/compare.trtsel.R
TreatmentSelection/R/eval.trtsel.R
TreatmentSelection/README.md
TreatmentSelection/MD5
TreatmentSelection/DESCRIPTION
TreatmentSelection/man
TreatmentSelection/man/print.calibrate.trtsel.Rd
TreatmentSelection/man/eval.trtsel.Rd
TreatmentSelection/man/TreatmentSelection-package.Rd
TreatmentSelection/man/print.eval.trtsel.Rd
TreatmentSelection/man/plot.trtsel.Rd
TreatmentSelection/man/print.compare.trtsel.rd
TreatmentSelection/man/compare.trtsel.Rd
TreatmentSelection/man/tsdata_scc.Rd
TreatmentSelection/man/calibrate.trtsel.Rd
TreatmentSelection/man/tsdata_cc.Rd
TreatmentSelection/man/print.trtsel.Rd
TreatmentSelection/man/is.trtsel.Rd
TreatmentSelection/man/tsdata.Rd
TreatmentSelection/man/trtsel.Rd