addroot | addroot: Adds a root edge ancestral to the first branching... |
bd.age.optim.matlab | bd.age.optim.matlab: Estimating speciation rate and... |
bd.densdep.optim | bd.densdep.optim: Estimating maximum likelihood speciation... |
bd.shifts.optim | bd.shifts.optim: Estimating speciation and extinction rate... |
bd.shifts.plot | bd.shifts.plot: Plots the diversification rate estimates... |
bdsky.stt.optim | bdsky.stt.optim: Estimating piecewise constant birth and... |
create.mat | create.mat: Generates input for LikAge and... |
get.groups | get.groups: Generates input for bd.shifts.optim when... |
LikAge | LikAge: Calculates the likelihood of speciation and... |
LikConstant | LikConstant: Calculates the likelihood of constant birth and... |
LikConstantn | LikConstantn: Calculates the likelihood of constant birth and... |
LikDD | LikDD: Calculates the likelihood of speciation and extinction... |
LikShifts | LikShifts: Calculates the likelihood of time-dependent birth... |
LikShiftsPP | LikShiftsPP: Calculates the likelihood of time-dependent... |
LikShiftsSTT | LikShiftsSTT: Calculates likelihood of piecewise constant... |
LikTypesSTT | LikTypesSTT: Calculates the likelihood of the 2-type... |
TreePar-package | Estimating birth and death rates based on phylogenies |
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