sim.genetree: sim.genetree: Simulating coalescent gene trees.
In TreeSim: Simulating Phylogenetic Trees
Description
Usage
Arguments
Value
Author(s)
References
Examples
Description
sim.genetree simulates a gene tree assuming the coalescent with coalescent rate being 1. The method returns summary statistics of the gene tree.
Usage
1
sim.genetree(n, numbsim)
Arguments
n
Number of extant sampled tips.
numbsim
Number of trees to simulate.
Value
statistics
For each simulated gene tree the following statistics are returned: "Colless","s","Sackin","cherries".
Author(s)
Tanja Stadler
References
T. Stadler, J. Degnan, N. Rosenberg. Manuscript.
Examples
1
2
3
4
n<-10
numbsim<-2
sim.genetree(n, numbsim)
TreeSim documentation built on May 2, 2019, 3:23 a.m.
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Description Usage Arguments Value Author(s) References Examples
Description
sim.genetree simulates a gene tree assuming the coalescent with coalescent rate being 1. The method returns summary statistics of the gene tree.
Usage
1 | sim.genetree(n, numbsim)
|
Arguments
n |
Number of extant sampled tips. |
numbsim |
Number of trees to simulate. |
Value
statistics |
For each simulated gene tree the following statistics are returned: "Colless","s","Sackin","cherries". |
Author(s)
Tanja Stadler
References
T. Stadler, J. Degnan, N. Rosenberg. Manuscript.
Examples
1 2 3 4 | n<-10
numbsim<-2
sim.genetree(n, numbsim)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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