MRCA: Most recent common ancestor

In TreeTools: Create, Modify and Analyse Phylogenetic Trees

Most recent common ancestor

Description

MRCA() calculates the last common ancestor of specified nodes.

Usage

MRCA(x1, x2, ancestors)

Arguments

x1, x2	Integer specifying index of leaves or nodes whose most recent common ancestor should be found.
ancestors	List of ancestors for each node in a tree. Perhaps produced by ListAncestors().

Details

MRCA() requires that node values within a tree increase away from the root, which will be true of trees listed in Preorder. No warnings will be given if trees do not fulfil this requirement.

Value

MRCA() returns an integer specifying the node number of the last common ancestor of x1 and x2.

Author(s)

Martin R. Smith ([e-mail])

See Also

Other tree navigation: AncestorEdge(), CladeSizes(), DescendantEdges(), EdgeAncestry(), EdgeDistances(), ListAncestors(), MatchEdges(), NDescendants(), NodeDepth(), NodeNumbers(), NodeOrder(), RootNode()

Examples

tree <- BalancedTree(7)

# Verify that node numbering increases away from root
plot(tree)
nodelabels()

# ListAncestors expects a tree in Preorder
tree <- Preorder(tree)
edge <- tree$edge
ancestors <- ListAncestors(edge[, 1], edge[, 2])
MRCA(1, 4, ancestors)

# If a tree must be in postorder, use:
tree <- Postorder(tree)
edge <- tree$edge
ancestors <- lapply(seq_len(max(edge)), ListAncestors,
                    parent = edge[, 1], child = edge[, 2])

TreeTools documentation built on Sept. 11, 2024, 8:27 p.m.