dot-ReadTrust_Report: Read TRUST4 report file.

In TrustVDJ: Tools for Immune Repertoire Analysis

Read TRUST4 report file.

Description

.ReadTrust_Report reads a report file generated by TRUST4. Note that it could be xx_report.tsv but not xx_barcode_report.tsv. (.gz supported)

Usage

.ReadTrust_Report(report_file = NULL, verbose = TRUE)

Arguments

report_file	character. Path to report file generated by TRUST4.
verbose	logical. Print progress. Default is TRUE

Value

A VDJ information data.frame

Examples

report_file = system.file('extdata', 'TRUST4_report.tsv.gz', package = 'TrustVDJ')
report = .ReadTrust_Report(report_file = report_file, verbose = FALSE)
head(report)

TrustVDJ documentation built on March 18, 2022, 5:53 p.m.