Files in UKB.COVID19
UK Biobank COVID-19 Data Processing and Risk Factor Association Tests
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
LICENSE
R/comorbidity_summary.R
R/variantQC.R
R/data_reform.R
R/risk_factor.R
R/sampleQC.R
R/asso_test.R
R/makeGWASFiles.R
R/comorbidity_asso.R
R/globals.R
R/makePhenotypes.R
R/covid_example.R
inst/GWAS/UKB.COVID19_GWAStutorial.html
inst/GWAS/UKB.COVID19_GWAStutorial.Rmd
inst/extdata/sim_hesin_diag.txt.gz
inst/extdata/sim_death.txt.gz
inst/extdata/coding240.txt.gz
inst/extdata/sim_withdrawn.csv.gz
inst/extdata/ICD10.coding19.txt.gz
inst/extdata/sim_hesin_critical.txt.gz
inst/extdata/sim_hesin.txt.gz
inst/extdata/sim_result_england.txt.gz
inst/extdata/sim_hesin_oper.txt.gz
inst/extdata/res_example.txt.gz
inst/extdata/sim_death_cause.txt.gz
inst/extdata/sim_covid19_misc.txt.gz
inst/extdata/sim_ukb_snp_qc.txt.gz
inst/extdata/sim_ukb.tab.gz
inst/extdata/alleleFreqs/ukb_mfi_chr11_v3.txt
inst/extdata/alleleFreqs/ukb_mfi_chr7_v3.txt
inst/extdata/alleleFreqs/ukb_mfi_chr17_v3.txt
inst/extdata/alleleFreqs/ukb_mfi_chrX_v3.txt
inst/extdata/alleleFreqs/ukb_mfi_chr5_v3.txt
inst/extdata/alleleFreqs/ukb_mfi_chr4_v3.txt
inst/extdata/alleleFreqs/ukb_mfi_chr12_v3.txt
inst/extdata/alleleFreqs/ukb_mfi_chr16_v3.txt
inst/extdata/alleleFreqs/ukb_mfi_chr19_v3.txt
inst/extdata/alleleFreqs/ukb_mfi_chr21_v3.txt
inst/extdata/alleleFreqs/ukb_mfi_chr22_v3.txt
inst/extdata/alleleFreqs/ukb_mfi_chr2_v3.txt
inst/extdata/alleleFreqs/ukb_mfi_chr3_v3.txt
inst/extdata/alleleFreqs/ukb_mfi_chr1_v3.txt
inst/extdata/alleleFreqs/ukb_mfi_chr18_v3.txt
inst/extdata/alleleFreqs/ukb_mfi_chr14_v3.txt
inst/extdata/alleleFreqs/ukb_mfi_chr13_v3.txt
inst/extdata/alleleFreqs/ukb_mfi_chr10_v3.txt
inst/extdata/alleleFreqs/ukb_mfi_chr15_v3.txt
inst/extdata/alleleFreqs/ukb_mfi_chr8_v3.txt
inst/extdata/alleleFreqs/ukb_mfi_chr20_v3.txt
inst/extdata/alleleFreqs/ukb_mfi_chrXY_v3.txt
inst/extdata/alleleFreqs/ukb_mfi_chr9_v3.txt
inst/extdata/alleleFreqs/ukb_mfi_chr6_v3.txt
inst/extdata/results/snpIncludeRSIDs_minMaf0.001,_minInfo,0.5.txt
inst/extdata/results/covariate.txt
inst/extdata/results/sampleExclude_plink.txt
inst/extdata/results/comorbidity_2020-3-16.txt
inst/extdata/results/sampleExclude_SAIGE.txt
inst/extdata/results/hospitalisation.txt
inst/extdata/results/sampleInclude_SAIGE.txt
inst/extdata/results/phenotype.txt
inst/extdata/results/sampleGenoQC.csv
inst/extdata/results/snpsIncludeRSIDs_GRM.txt
inst/extdata/results/sampleInclude_plink.txt
inst/extdata/results/snpIncludeSNPIDs_minMaf0.001,_minInfo,0.5.txt
tests/testthat.R
tests/testthat/test_comorbidity_asso.R
tests/testthat/test_asso_test.R
tests/testthat/test_risk_factor.R
tests/testthat/test_makePhenotypes.R
tests/testthat/test_comorbidity_summary.R
man/log_cov.Rd
man/sampleQC.Rd
man/risk_factor.Rd
man/data_reform.Rd
man/makePhenotypes.Rd
man/makeGWASFiles.Rd
man/comorbidity_summary.Rd
man/covid_example.Rd
man/variantQC.Rd
man/comorbidity_asso.Rd
