showMatrix3D: showMatrix3D

In Umatrix: Visualization of Structures in High-Dimensional Data

showMatrix3D

Description

Visualizes the matrix(Umatrix/Pmatrix) in an interactive window in 3D.

Arguments

Matrix	Matrix to be plotted
BestMatches	Positions of BestMatches to be plotted onto the matrix
Cls	Class identifier for the BestMatch at the given point
Imx	a mask (island) that will be used to cut out the Umatrix
Toroid	Should the Matrix be drawn 4 times (in a toroid view)
HeightScale	Optional. Scaling Factor for Mountain Height
BmSize	Size of drawn BestMatches
RemoveOcean	Remove as much area sourrounding an island as possible
ColorStyle	Either "Umatrix" or "Pmatrix" respectevily for their colors
ShowAxis	Draw an axis arround the drawn matrix
SmoothSlope	Try to increase the island size, to get smooth slopes around the island
ClsColors	Vector of colors that will be used for classes
FileName	Name for a stl file to write the Matrix to

Details

The heightScale is set at the proportion of the 1 percent quantile against the 99 percent quantile of the Matrix values.

References

Thrun, M. C., Lerch, F., Loetsch, J., Ultsch, A.: Visualization and 3D Printing of Multivariate Data of Biomarkers, in Skala, V. (Ed.), International Conference in Central Europe on Computer Graphics, Visualization and Computer Vision,Plzen, 2016.

Examples

## Not run: 
data("Hepta")
e = esomTrain(Hepta$Data, Key = 1:nrow(Hepta$Data))
showMatrix3D(e$Umatrix)

## End(Not run)

Umatrix documentation built on Sept. 11, 2024, 8:09 p.m.