API for Umpire
Simulating Realistic Gene Expression and Clinical Data

Global functions
.realizeOutcome Source code
.realizeSurvival Source code
BlockHyperParameters Man page Source code
BlockHyperParameters-class Man page
CancerEngine Man page Source code
CancerEngine-class Man page
CancerModel Man page Source code
CancerModel-class Man page
ClinicalBHP Source code
ClinicalEngine Man page Source code
ClinicalNoiseModel Man page Source code
Engine Man page Source code
Engine-class Man page
EngineWithActivity Man page Source code
EngineWithActivity-class Man page
IndependentLogNormal Man page Source code
IndependentLogNormal-class Man page
IndependentNormal Man page Source code
IndependentNormal-class Man page
MVN Man page Source code
MVN-class Man page
MixedTypeEngine Man page
MixedTypeEngine-class Man page
NoiseModel Man page Source code
NoiseModel-class Man page
NormalVsCancerEngine Man page Source code
NormalVsCancerModel Man page Source code
Prevalence Source code
SurvivalModel Man page Source code
SurvivalModel-class Man page
addControl Man page
addControl,ANY-method Man page
addControl,CancerEngine-method Man page
addControl,CancerModel-method Man page
addControl-method Man page
alterMean Man page
alterMean,ANY-method Man page
alterMean,Engine-method Man page
alterMean,IndependentLogNormal-method Man page
alterMean,IndependentNormal-method Man page
alterMean,MVN-method Man page
alterMean-method Man page
alterSD Man page
alterSD,ANY-method Man page
alterSD,Engine-method Man page
alterSD,IndependentLogNormal-method Man page
alterSD,IndependentNormal-method Man page
alterSD,MVN-method Man page
alterSD-method Man page
blur Man page
blur,ANY-method Man page
blur,NoiseModel-method Man page
blur-method Man page
computeBlocks Source code
correl Man page Source code
covar Man page Source code
getDaisyTypes Man page Source code
getDataTypes Man page Source code
invGammaMultiple Man page Source code
makeBinary Source code
makeBlockStructure Man page Source code
makeCategories Source code
makeDataTypes Man page Source code
nComponents Man page
nComponents,ANY-method Man page
nComponents,CancerEngine-method Man page
nComponents,Engine-method Man page
nComponents-method Man page
nHitsPerPattern Man page Source code
nPatterns Man page Source code
nPossibleHits Man page Source code
ncol,CancerModel-method Man page
normalOffset Man page Source code
nrow,CancerEngine-method Man page
nrow,CancerModel-method Man page
nrow,Engine-method Man page
nrow,IndependentLogNormal-method Man page
nrow,IndependentNormal-method Man page
nrow,MVN-method Man page
outcomeCoefficients Man page Source code
rand Man page
rand,ANY-method Man page
rand,CancerEngine-method Man page
rand,CancerModel-method Man page
rand,Engine-method Man page
rand,EngineWithActivity-method Man page
rand,IndependentLogNormal-method Man page
rand,IndependentNormal-method Man page
rand,MVN-method Man page
rand,MixedTypeEngine-method Man page
rand,SurvivalModel-method Man page
rand-method Man page
summary,CancerEngine-method Man page
summary,CancerModel-method Man page
summary,Engine-method Man page
summary,EngineWithActivity-method Man page
summary,IndependentLogNormal-method Man page
summary,IndependentNormal-method Man page
summary,MVN-method Man page
summary,MixedTypeEngine-method Man page
summary,NoiseModel-method Man page
survivalCoefficients Man page Source code
Umpire documentation built on Nov. 11, 2020, 1:08 a.m.