API for Umpire
Simulating Realistic Gene Expression Data

Global functions
BlockHyperParameters Man page Source code
BlockHyperParameters-class Man page
CancerEngine Man page Source code
CancerEngine-class Man page
CancerModel Man page Source code
CancerModel-class Man page
Engine Man page Source code
Engine-class Man page
EngineWithActivity Man page Source code
EngineWithActivity-class Man page
IndependentLogNormal Man page Source code
IndependentLogNormal-class Man page
IndependentNormal Man page Source code
IndependentNormal-class Man page
MVN Man page Source code
MVN-class Man page
NoiseModel Man page Source code
NoiseModel-class Man page
NormalVsCancerEngine Man page Source code
NormalVsCancerModel Man page Source code
SurvivalModel Man page Source code
SurvivalModel-class Man page
Umpire Man page
Umpire-package Man page
alterMean Man page
alterMean,ANY-method Man page
alterMean,Engine-method Man page
alterMean,IndependentNormal-method Man page
alterMean,MVN-method Man page
alterMean-method Man page
alterSD Man page
alterSD,ANY-method Man page
alterSD,Engine-method Man page
alterSD,IndependentNormal-method Man page
alterSD,MVN-method Man page
alterSD-method Man page
blur Man page
blur,ANY-method Man page
blur,NoiseModel-method Man page
blur-method Man page
correl Man page Source code
covar Man page Source code
invGammaMultiple Man page Source code
makeBlockStructure Man page Source code
nComponents Man page Source code
nHitsPerPattern Man page Source code
nPatterns Man page Source code
nPossibleHits Man page Source code
ncol,CancerModel-method Man page
normalOffset Man page Source code
nrow,CancerModel-method Man page
nrow,Engine-method Man page
nrow,IndependentLogNormal-method Man page
nrow,IndependentNormal-method Man page
nrow,MVN-method Man page
outcomeCoefficients Man page Source code
rand Man page
rand,ANY-method Man page
rand,CancerEngine-method Man page
rand,CancerModel-method Man page
rand,Engine-method Man page
rand,EngineWithActivity-method Man page
rand,IndependentLogNormal-method Man page
rand,IndependentNormal-method Man page
rand,MVN-method Man page
rand,SurvivalModel-method Man page
rand-method Man page
realizeOutcome Source code
realizeSurvival Source code
summary,CancerEngine-method Man page
summary,CancerModel-method Man page
summary,Engine-method Man page
summary,EngineWithActivity-method Man page
summary,IndependentLogNormal-method Man page
summary,IndependentNormal-method Man page
summary,MVN-method Man page
survivalCoefficients Man page Source code
Umpire documentation built on July 12, 2017, 1:02 a.m.