UpSetR: A More Scalable Alternative to Venn and Euler Diagrams for Visualizing Intersecting Sets
Version 1.3.3

Creates visualizations of intersecting sets using a novel matrix design, along with visualizations of several common set, element and attribute related tasks.

Browse man pages Browse package API and functions Browse package files

AuthorJake Conway [cre], Nils Gehlenborg [aut]
Date of publication2017-03-21 21:59:31 UTC
MaintainerJake Conway <jake_conway@hms.harvard.edu>
LicenseMIT + file LICENSE
Version1.3.3
URL http://github.com/hms-dbmi/UpSetR
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("UpSetR")

Man pages

elements: Element query for queries paramter
fromExpression: Expression to UpSetR converters
fromList: List of named vectors to UpSetR converter
histogram: Histogram for custom plot
intersects: Intersection query for queries paramter
scatter_plot: Scatterplot for customplot
upset: UpSetR Plot

Functions

BaseBoxPlot Source code
BaseCustomPlot Source code
BoxPlotsPlot Source code
Counter Source code
Create_layout Source code
Create_matrix Source code
CustomAttData Source code
ElemBarDat Source code
FindMostFreq Source code
FindSetFreqs Source code
FindStartEnd Source code
GenerateCustomPlots Source code
GetElements Source code
GetIntersects Source code
Get_aggregates Source code
GuideGenerator Source code
IntersectionBoxPlot Source code
MakeShading Source code
Make_base_plot Source code
Make_labels Source code
Make_legend Source code
Make_main_bar Source code
Make_matrix_plot Source code
Make_set_metadata_plot Source code
Make_size_plot Source code
NoAttBasePlot Source code
Number_of_sets Source code
OverlayEdit Source code
QuerieElemAtt Source code
QuerieInterAtt Source code
QuerieInterBar Source code
QuerieInterData Source code
Remove Source code
SeperateQueries Source code
Subset_att Source code
Wanted Source code
combineQueriesData Source code
customQueries Source code
customQueriesBar Source code
elements Man page Source code
fromExpression Man page Source code
fromList Man page Source code
get_shade_groups Source code
histogram Man page Source code
intersects Man page Source code
log10_reverse_trans Source code
log2_reverse_trans Source code
metadataHeat Source code
metadataHist Source code
metadataText Source code
order_sets Source code
scatter_plot Man page Source code
specific_intersections Source code
upset Man page Source code
vplayout Source code

Files

inst
inst/extdata
inst/extdata/movies.csv
inst/extdata/mutations.csv
inst/doc
inst/doc/queries.R
inst/doc/queries.html
inst/doc/attribute.plots.Rmd
inst/doc/set.metadata.plots.Rmd
inst/doc/basic.usage.R
inst/doc/basic.usage.Rmd
inst/doc/set.metadata.plots.html
inst/doc/attribute.plots.R
inst/doc/set.metadata.plots.R
inst/doc/attribute.plots.html
inst/doc/basic.usage.html
inst/doc/queries.Rmd
NAMESPACE
NEWS
R
R/Intersection.queries.R
R/Element.queries.R
R/UpSet.plot.R
R/intersects.R
R/upset.R
R/Boxplot.R
R/Custom.plots.R
R/MainBar.R
R/General.query.funcs.R
R/histogram.R
R/SizeBar.R
R/Helper.funcs.R
R/scatter_plot.R
R/fromList.R
R/Matrix.R
R/fromExpression.R
R/elements.R
R/Set.metadata.R
R/Custom.user.queries.R
R/Specific.intersections.R
R/Metadata.plots.R
vignettes
vignettes/attribute.plots.Rmd
vignettes/set.metadata.plots.Rmd
vignettes/basic.usage.Rmd
vignettes/queries.Rmd
README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/fromList.Rd
man/intersects.Rd
man/fromExpression.Rd
man/upset.Rd
man/elements.Rd
man/scatter_plot.Rd
man/histogram.Rd
LICENSE
UpSetR documentation built on May 20, 2017, 2:41 a.m.