README.md

Variable-Lag Time Series Causality Inference Framework (VLTimeSeriesCausality)

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A framework to infer causality on a pair of time series of real numbers based on Variable-lag Granger causality (VL-Granger) and transfer entropy (VL-Transfer Entropy).

Typically, Granger causality and transfer entropy have an assumption of a fixed and constant time delay between the cause and effect. However, for a non-stationary time series, this assumption is not true. For example, considering two time series of velocity of person A and person B where B follows A. At some time, B stops tying his shoes, then running to catch up A. The fixed-lag assumption is not true in this case.

We propose a framework that allows variable-lags between cause and effect in Granger causality and transfer entropy to allow them to deal with variable-lag non-stationary time series.

Installation

For the newest version on github, please call the following command in R terminal.

remotes::install_github("DarkEyes/VLTimeSeriesCausality")

This requires a user to install the "remotes" package before installing VLTimeSeriesCausality.

Example: Inferred VL-Granger causality time series

In the first step, we generate time series TS$X and TS$Y where TS$X causes TS$Y with variable-lags.

library(VLTimeSeriesCausality)
# Generate simulation data
TS <- VLTimeCausality::SimpleSimulationVLtimeseries()

We can plot time series using the following function.

VLTimeCausality::plotTimeSeries(TS$X,TS$Y)

A sample of generated time series pair that has a causal relation is plotted below:

We use the following function to infer whether X causes Y.

# Run the function
out<-VLTimeCausality::VLGrangerFunc(Y=TS$Y,X=TS$X)

The result of Granger causality is below:

out$BICDiffRatio
[1] 0.8882051

out$XgCsY
[1] TRUE

Citation

Chainarong Amornbunchornvej, Elena Zheleva, and Tanya Berger-Wolf (2019). Variable-lag Granger Causality for Time Series Analysis. In Proceedings of the 6th IEEE International Conference on Data Science and Advanced Analytics (DSAA), pp. 21-30. IEEE. link

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VLTimeCausality documentation built on Dec. 28, 2019, 9:06 a.m.