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Permits to apply the 'Vertex Sort' algorithm (Jothi et al. (2009) <10.1038/msb.2009.52>) to a graph in order to elucidate its hierarchical structure. It also allows graphic visualization of the sorted graph by exporting the results to a cytoscape friendly format. Moreover, it offers five different algorithms of graph randomization: 1) Randomize a graph with preserving node degrees, 2) with preserving similar node degrees, 3) without preserving node degrees, 4) with preserving node indegrees and 5) with preserving node outdegrees.
Package details 


Author  Diala AbdRabbo 
Maintainer  Diala AbdRabbo <[email protected]> 
License  GPL (>= 2) 
Version  0.11 
Package repository  View on CRAN 
Installation 
Install the latest version of this package by entering the following in R:

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