makeplot3D: Plot Three-dimensional Quantile

In Yamm: Multivariate Methods Based on Projections and Related Concepts

Plot Three-dimensional Quantile

Description

This function calls muqie3D for multiple values of quantiles from 0.5 to 0.95 and then produces a set of perspective plots of a surface over the x-y plane with these quantiles, which are used to produce an animated GIF using package animation.

Usage

makeplot3D(xdata, dm=c(1,2,3), nsegs=30,
         quantile.increment= 0.005, 
         nprojs=2000, reltol=0.001)

Arguments

xdata	The data as a matrix or dataframe with the number of columns greater than or equal to three, with each row being viewed as one multivariate observation.
dm	A numeric vector with three entries representing the selected columns of the data considered. The default value is c(1,2,3), which means the first three columns of data are chosen if the dimension of data is more than three.
nsegs	The number of the three-dimensional unit-length direction vectors u, which is computed by dividing a unit sphere into nsegs equal sectors.
quantile.increment	A numeric value specifies the increment of the set of different quantiles.
nprojs	The number of projections for the dataset when computing yamm. The default value is 2000.
reltol	The tolerance of the optimisation process in the function yamm. The default value is 0.001.

Value

This function returns a set of perspective plots of a surface over the x-y plane with various specified quantiles.

References

Chen, F. and Nason, Guy P. (2020) A new method for computing the projection medi an, its influence curve and techniques for the production of projected quantile plots. PLOS One, doi: 10.1371/journal.pone.0229845

See Also

yamm muqie3D

Examples

#
data(beetle)
#
# Produce an animation of a set of multivariate quantile plots.
if (requireNamespace("animation"))	{

library("animation")
# Generate temporary file
f <- tempfile(fileext=".gif")
#
# Now generate movie into the temporary file.
# Here nprojs=40: for a real example, for production quality you should increase
# it to 1000, 2000 or even higher
#
# Here quantile.increment=0.1, for production quality this should be reduced to
# e.g. 0.01, of even smaller
#
saveGIF(makeplot3D(beetle, dm=c(1,3,6), nprojs=40, quantile.increment=0.1),
diff.col=3, interval=0.1,width=500, height=500, movie.name=f)
cat("Movie saved to: ", f, "\n")
}

Yamm documentation built on May 20, 2022, 5:06 p.m.