ZIBseq: Conducts the zero-inflated beta regression based on the...
In ZIBseq: Differential Abundance Analysis for Metagenomic Data via Zero-Inflated Beta Regression
Description
Usage
Arguments
Details
Value
Author(s)
References
See Also
Description
zero-inflated beta regression
Usage
1
Arguments
data
a matrix records the count data
outcome
a categorical vector of a specific kind of clinical condition
transform
square-root transform of the compositional matrix
alpha
customized threshold while calculating q values
Details
The function takes the sparse nature of metagenomics data into account and handle the compositional data efficiently.
Value
sigFeature
output the significant feature
useFeature
features being concerned
qvalue
qvalue
pvalue
pvalue
Author(s)
Hongliang Chen
References
Peng Xiaoling, Li Gang, and Liu Zhenqiu. Journal of Computational Biology. January 2016, 23(2): 102-110. doi:10.1089/cmb.2015.0157.
See Also
ZIBseq documentation built on May 2, 2019, 3:37 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value Author(s) References See Also
Description
zero-inflated beta regression
Usage
1 |
Arguments
data |
a matrix records the count data |
outcome |
a categorical vector of a specific kind of clinical condition |
transform |
square-root transform of the compositional matrix |
alpha |
customized threshold while calculating q values |
Details
The function takes the sparse nature of metagenomics data into account and handle the compositional data efficiently.
Value
sigFeature |
output the significant feature |
useFeature |
features being concerned |
qvalue |
qvalue |
pvalue |
pvalue |
Author(s)
Hongliang Chen
References
Peng Xiaoling, Li Gang, and Liu Zhenqiu. Journal of Computational Biology. January 2016, 23(2): 102-110. doi:10.1089/cmb.2015.0157.
See Also
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.