API for aLFQ
Estimating Absolute Protein Quantities from Label-Free LC-MS/MS Proteomics Data
| Global functions | |
|---|---|
| ALF | Man page Source code |
| ALF.default | Man page Source code |
| APEX | Man page Source code |
| APEX.default | Man page Source code |
| APEXMS | Man page |
| APEX_LCQ | Man page |
| APEX_ORBI | Man page |
| AbsoluteQuantification | Man page Source code |
| AbsoluteQuantification.default | Man page Source code |
| LUDWIGMS | Man page |
| LUDWIG_SRM | Man page |
| PeptideInference | Man page Source code |
| PeptideInference.default | Man page Source code |
| ProteinInference | Man page Source code |
| ProteinInference.default | Man page Source code |
| UPS2 | Man page |
| UPS2MS | Man page |
| UPS2_LFQ | Man page |
| UPS2_SC | Man page |
| UPS2_SRM | Man page |
| aLFQ | Man page |
| aLFQ-package | Man page |
| abacus_converter.import | Source code |
| abacus_transform.import | Source code |
| apexFeatures | Man page Source code |
| apexFeatures.default | Man page Source code |
| averageruns.import | Source code |
| cval | Man page Source code |
| cval.APEX | Man page Source code |
| cval.AbsoluteQuantification | Man page Source code |
| cval.default | Man page Source code |
| export | Man page Source code |
| export.AbsoluteQuantification | Man page Source code |
| export.default | Man page Source code |
| folderror.AbsoluteQuantification | Source code |
| hist.AbsoluteQuantification | Man page Source code |
| import | Man page Source code |
| import.default | Man page Source code |
| mprophet_converter.import | Source code |
| openmslfq_converter.import | Source code |
| openmslfq_transform.import | Source code |
| openswath_converter.import | Source code |
| pcfeatures.apexFeatures | Source code |
| pepxml2csv_converter.import | Source code |
| performanceplot.ALF | Source code |
| pivot | Man page Source code |
| pivot.AbsoluteQuantification | Man page Source code |
| pivot.default | Man page Source code |
| plot.APEX | Man page Source code |
| plot.AbsoluteQuantification | Man page Source code |
| predict.APEX | Man page Source code |
| predict.AbsoluteQuantification | Man page Source code |
| print.APEX | Man page Source code |
| print.AbsoluteQuantification | Man page Source code |
| print.apexFeatures | Man page Source code |
| protein_inference.ProteinInference | Source code |
| proteotypic | Man page Source code |
| proteotypic.default | Man page Source code |
| read_table.import | Source code |
| skyline_converter.import | Source code |
| strictnessfilter.ProteinInference | Source code |
| stripsequence.import | Source code |
| trypsin | Source code |
| trypsin.default | Source code |
| tune.ALF | Source code |
