LUDWIGMS: Estimation of Absolute Protein Quantities of Unlabeled...

In aLFQ: Estimating Absolute Protein Quantities from Label-Free LC-MS/MS Proteomics Data

Description

This dataset contains the Leptospira interrogans MS data from Ludwig C., et al. (2012).

Usage

data(LUDWIGMS)

Format

The data structure for LUDWIG_SRM represents a data.frame containing the following column header: "run_id" (freetext), "protein_id" (freetext), "peptide_id" (freetext), "transition_id" (freetext), "peptide_sequence" (unmodified, natural amino acid sequence in 1-letter nomenclature), "precursor_charge" (positive integer value), "transition_intensity" (positive non-logarithm floating value) and "concentration" (calibration: positive non-logarithm floating value, prediction: "?").

References

Ludwig, C., Claassen, M., Schmidt, A. & Aebersold, R. Estimation of Absolute Protein Quantities of Unlabeled Samples by Selected Reaction Monitoring Mass Spectrometry. Molecular & Cellular Proteomics 11, M111.013987-M111.013987 (2012).

See Also

import, ProteinInference, AbsoluteQuantification, ALF, APEX, apexFeatures, proteotypic

Examples

data(LUDWIGMS)

aLFQ documentation built on Jan. 8, 2020, 5:09 p.m.