| AbsoluteQuantification | Absolute label-free quantification of mass spectrometry... |
| ALF | Generate ALF report |
| aLFQ.package | aLFQ |
| APEX | Training, testing and validation of APEX peptide... |
| apexFeatures | Calculation of physicochemical amino acid properties for APEX |
| APEXMS | Calculating absolute and relative protein abundance from mass... |
| import | import of mass spectrometry proteomics data analysis software... |
| LUDWIGMS | Estimation of Absolute Protein Quantities of Unlabeled... |
| PeptideInference | Peptide inference for aLFQ import data frame |
| ProteinInference | Protein inference for aLFQ import data frame |
| proteotypic | Prediction of the flyability of proteotypic peptides |
| UPS2MS | Calculating absolute and relative protein abundance from mass... |
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