abctools: Tools for ABC Analyses

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Tools for approximate Bayesian computation including summary statistic selection and assessing coverage.

Author
Matt Nunes [aut, cre], Dennis Prangle [aut]
Date of publication
2016-01-14 16:15:41
Maintainer
Matt Nunes <m.nunes@lancaster.ac.uk>
License
GPL (>= 2)
Version
1.0.4
URLs

View on CRAN

Man pages

abctools-package
Tools for ABC analyses
AS.select
Summary statistics selection using approximate sufficiency.
AS.test
Test for relative approximate sufficiency between two...
coal
Examples of coalescent data
combmat
table of combinations
cov.pi
Coverage property diagnostics
mc.ci
Diagnostic plots for model choice coverage output
mincrit
Summary statistics selection by minimizing a posterior sample...
nn.ent
Works out entropy of a sample.
rsse
Simulation error measures.
saABC
Summary statistic construction by semi-automatic ABC
selectsumm
Generic function for selecting summary statistics in ABC...
semiauto.abc
Performs semi-automatic ABC based on summary statistics...
stage2
stage2

Files in this package

abctools
abctools/inst
abctools/inst/CITATION
abctools/src
abctools/src/Makevars
abctools/src/abctools.c
abctools/NAMESPACE
abctools/data
abctools/data/coal.rda
abctools/data/datalist
abctools/data/coalobs.rda
abctools/R
abctools/R/stage2.R
abctools/R/AS.test.R
abctools/R/AS.select.R
abctools/R/selectsumm.R
abctools/R/semiauto.abc.R
abctools/R/mincrit.R
abctools/R/cov.pi.R
abctools/R/nn.ent.R
abctools/R/cov.mc.R
abctools/R/fillcomb.R
abctools/R/rsse.R
abctools/R/saABC.R
abctools/R/combmat.R
abctools/R/zzz.R
abctools/R/sse.R
abctools/MD5
abctools/DESCRIPTION
abctools/man
abctools/man/semiauto.abc.Rd
abctools/man/AS.select.Rd
abctools/man/saABC.Rd
abctools/man/combmat.Rd
abctools/man/selectsumm.Rd
abctools/man/rsse.Rd
abctools/man/coal.Rd
abctools/man/stage2.Rd
abctools/man/mincrit.Rd
abctools/man/AS.test.Rd
abctools/man/abctools-package.Rd
abctools/man/nn.ent.Rd
abctools/man/mc.ci.Rd
abctools/man/cov.pi.Rd