ace_to_fastq: ace_to_fastq

In ace2fastq: ACE File to FASTQ Converter

Description

Converts one or more contig sequences in .ace file format to .fastq format. The parameter target_dir has a special value 'stdout' which will just return the contigs as a list.

Usage

ace_to_fastq(filename, target_dir = dirname(filename), name2id = TRUE)

Arguments

filename	.ace file
target_dir	target directory or stdout
name2id	use the file name as primary id or not. Default is TRUE.

Value

list

Author(s)

Reinhard Simon

Examples

  library(ace2fastq)
  filename <- system.file("sampledat/1.seq.ace", package = "ace2fastq")
 
  fileout <- ace_to_fastq(filename, target_dir = tempdir())

ace2fastq documentation built on June 20, 2019, 5:03 p.m.