Files in acnr
Annotated Copy-Number Regions

MD5

DESCRIPTION

NAMESPACE

inst/CITATION

inst/doc/autocorrelation.Rmd inst/doc/autocorrelation.R inst/doc/acnr.R

inst/doc/acnr.html

inst/doc/autocorrelation.html

inst/doc/acnr.Rmd inst/preprocessing/GSE13372/06.exportRegionData.R inst/preprocessing/GSE13372/04.writeWholeGenomeData.R inst/preprocessing/GSE13372/01.checkAnnotationData.R inst/preprocessing/GSE13372/02.downloadRawData.R inst/preprocessing/GSE13372/05.defineCopyNumberSegments.R inst/preprocessing/GSE13372/01.downloadAnnotationData.R inst/preprocessing/GSE13372/00.install.R inst/preprocessing/GSE13372/03.doASCRMAv2.R inst/preprocessing/GSE13372/07.mergeCnRegionData.R inst/preprocessing/GSE11976/03.mergeCnRegionData.R inst/preprocessing/GSE11976/01.defineCopyNumberSegments.R inst/preprocessing/GSE11976/02.exportRegionData.R inst/preprocessing/GSE11976/00.PrepareData.R inst/preprocessing/GSE11976/03.plotRegions.R inst/preprocessing/GSE29172/01.checkAnnotationData.R inst/preprocessing/GSE29172/09.LightCnRegionData.R inst/preprocessing/GSE29172/04.plotTracks.R inst/preprocessing/GSE29172/05.defineCopyNumberSegments.R inst/preprocessing/GSE29172/08.mergeCnRegionData.R inst/preprocessing/GSE29172/07.exportRegionData.R inst/preprocessing/GSE29172/06.plotCopyNumberSegments.R inst/preprocessing/GSE29172/00.install.R inst/preprocessing/GSE29172/02.doASCRMAv2.R inst/preprocessing/GSE29172/03.writeWholeGenomeData.R

inst/extdata/GSE13372_HCC1143.rds

inst/extdata/GSE11976_CRL2324.rds

inst/extdata/GSE29172_H1395.rds

vignettes/autocorrelation.Rmd vignettes/acnr.Rmd R/getMinorMajorCopyNumbers.R R/listDataSets.R R/loadCnRegionData.R R/listTumorFractions.R R/extdata.R R/loadDataSet.R man/GSE29172_H1395.Rd man/GSE11976_CRL2324.Rd man/GSE13372_HCC1143.Rd man/getMinorMajorCopyNumbers.Rd man/listTumorFractions.Rd man/listDataSets.Rd man/acnr-package.Rd man/loadCnRegionData.Rd

build/vignette.rds

tests/testthat.R tests/testthat/test_dataSetConsistency.R tests/testthat/test_tumorFractions.R tests/testthat/test_germlineGenotypes.R tests/testthat/test_monotonicCopyNumbers.R

acnr documentation built on May 2, 2019, 9:25 a.m.

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