adaptivetau: Tau-Leaping Stochastic Simulation

Share:

Implements adaptive tau leaping to approximate the trajectory of a continuous-time stochastic process as described by Cao et al. (2007) The Journal of Chemical Physics <doi:10.1063/1.2745299>. This package is based upon work supported by NSF DBI-0906041 and NIH K99-GM104158 to Philip Johnson and NIH R01-AI049334 to Rustom Antia.

Author
Philip Johnson
Date of publication
2016-10-25 00:43:16
Maintainer
Philip Johnson <plfj@umd.edu>
License
GPL (>= 3)
Version
2.2-1

View on CRAN

Man pages

ssa.adaptivetau
Approximate stochastic simulation algorithm
ssa.exact
Exact stochastic simulation algorithm
ssa.maketrans
Make transition matrix

Files in this package

adaptivetau
adaptivetau/inst
adaptivetau/inst/doc
adaptivetau/inst/doc/adaptivetau.R
adaptivetau/inst/doc/adaptivetau.pdf
adaptivetau/inst/doc/adaptivetau.Rnw
adaptivetau/src
adaptivetau/src/Makevars
adaptivetau/src/Rwrappers.h
adaptivetau/src/adaptivetau.cpp
adaptivetau/NAMESPACE
adaptivetau/NEWS
adaptivetau/R
adaptivetau/R/ssa.adaptivetau.R
adaptivetau/vignettes
adaptivetau/vignettes/refs.bib
adaptivetau/vignettes/adaptivetau.Rnw
adaptivetau/MD5
adaptivetau/build
adaptivetau/build/vignette.rds
adaptivetau/DESCRIPTION
adaptivetau/man
adaptivetau/man/ssa.adaptivetau.Rd
adaptivetau/man/ssa.maketrans.Rd
adaptivetau/man/ssa.exact.Rd