adehabitat: Analysis of Habitat Selection by Animals

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A collection of tools for the analysis of habitat selection by animals.

Author
Clement Calenge, contributions from Mathieu Basille, Stephane Dray and Scott Fortmann-Roe
Date of publication
2015-07-22 16:15:32
Maintainer
Clement Calenge <clement.calenge@oncfs.gouv.fr>
License
GPL (>= 2)
Version
1.8.18

View on CRAN

Man pages

adehabitat-package
adehabitat: a Package for the Analysis of the Space Use by...
albatross
Argos Monitoring of Adult Albatross Movement
angles
Compute Turning Angles - Deprecated
area2asc
Converts a Polygon to Raster
area2dxf
Exportation of Areas
as.area
Objects of Class "area"
asc2im
Conversion of Maps of Class 'asc' and 'im' (Package spatstat)
ascgen
Creation of Raster Maps
as.kasc
Working with Several Raster Maps
as.ltraj
Working with Trajectories in 2D Space: the Class ltraj
as.sahrlocs
Exploratory Analysis of Habitat Selection
as.traj
Working with Trajects in 2D Space
bauges
Census of chamois (Rupicapra rupicapra) in the Bauges...
bear
GPS monitoring of one brown bear
bighorn
Radio-Tracking of Bighorn Sheeps
biv.test
Bivariate Test
buffer
Compute Buffers
burst
ID and Bursts of an Object of Class ltraj
capreochiz
GPS Monitoring of one Roe Deer in Chize (France)
capreotf
GPS Monitoring of one Roe Deer in Trois-Fontaines (France)
chamois
Location of Chamois Groups in the Chartreuse Mountains
Chi
The Chi Distribution
c.ltraj
Combine Bursts of Relocations in Objects of Class "ltraj"
clusthr
Estimation of Home Range by Clustering
colasc
Creates a Vector of Colors for a Raster Map of Type 'factor'
compana
Compositional Analysis of Habitat Use
convnum
Conversion from Factor to Numeric for Raster Map
count.points.id
Number of Points in Each Pixel of a Raster Map
cutltraj
Split Trajectories into Several Bursts
distfacmap
Compute distances to the different levels of a factor map
domain
Estimation of the Potential Distribution of a Species
dunnfa
Factorial Analysis of the Specialization in Habitat Selection...
eisera
Eigenanalysis of Selection Ratios
enfa
Ecological Niche Factor Analysis
engen2008II
Measuring Habitat Selection Using the Method of Engen et al....
explore.kasc
Interactive Exploration of Maps of Class kasc (requires the...
Extract.ltraj
Extract or Replace Parts of an Object of Class ltraj
findmaxasc
Find Local Maxima on a Map of Class 'asc'
fpt
Computation of the First Passage Time From Trajectories
gdltraj
Working with Trajectories: Specify a Time Period
getascattr
Copy the Attributes of an Object of Class 'asc' or 'kasc' to...
getcontour
Computes the Contour Polygon of a Raster Object
getXYcoords
Computes the X and Y Coordinates of the Pixels of a Raster...
gnesfa
General Niche-Environment System Factor Analysis
hbrown
Estimates the value of h for a Brownian motion
hist.kasc
Histograms of Mapped Variables
hist.ltraj
Histogram of the Descriptive Parameters of a Trajectory
histniche
Histograms of the Ecological Niche
hr.rast
Rasterisation of Objects of Class 'area'
hseal
Argos Monitoring of Hooded Seal
ibex
GPS Monitoring of Four Ibex in the Belledonne Mountain
ibexraw
GPS Monitoring of Four Ibex in the Belledonne Mountain...
image.asc
Displays a Color Image of a Matrix of Class 'asc'
image.sahrlocs
Graphical Display of the Habitat Composition of the Home...
import.asc
Arcview ASCII Raster File Importation And Exportation
indmove
Testing Independence in Regular Trajectory Parameters
is.regular
Regular Trajectories
is.sd
Handling of Trajectories of the Same Duration
join.asc
Finds the Value of Mapped Variables at some Specified...
kasc2df
Conversion of Objects of Class kasc
kasc2spixdf
Conversion of maps from/to the package "sp"
kernelbb
Estimation of Kernel Brownian Bridge Home-Range
kernelkc
Kernel Smoothing in Space and Time of the Animals' Use of...
kerneloverlap
Spatial Interaction between Animals Monitored Using...
kernelUD
Estimation of Kernel Home-Range
kselect
K-Select Analysis: a Method to Analyse the Habitat Selection...
kver
Handling of Objects of Class kver
labcon
Labelling Connected Features
lowres
Reducing the Resolution of a Map
lynxjura
Monitoring of Lynx
madifa
The MADIFA: a Factorial Decomposition of the Mahalanobis...
mahasuhab
Habitat Suitability Mapping with Mahalanobis Distances.
managNAkasc
"Cleaning" Objects of Class 'kasc'
mcp
Estimation of the Home Range Using the Minimum Convex Polygon...
mcp.rast
Converts a Polygon to Raster
mindistkeep
Detecting Absence of Movement in an Object of Class 'ltraj'
modpartltraj
Segmentation of a trajectory based on Markov models
morphology
Morphology: Erosion or Dilatation of Features on a Raster Map
mouflon
GPS Monitoring of One Mouflon in the Caroux Mountain
niche.test
Monte-Carlo Test on Parameters of the Ecological Niche
offsetdate
Date Handling in an Object of Class 'ltraj'
perarea
Compute Areas and Perimeters of Objects of Class "area"
pheasant
Radio-Tracking of Pheasants
plot.area
Graphical Display of Objects of Class "area"
plotltr
Changes in Traject Parameters Over Time
plot.ltraj
Graphical Display of an Object of Class "ltraj"
plot.sahrlocs
Exploratory Analysis of Habitat Selection
porpoise
Argos monitoring of Porpoise Movements
predict.enfa
Habitat Suitability Maps Built from the ENFA
puech
Radio-Tracking Data of Wild Boar (2)
puechabon
Radio-Tracking Data of Wild Boar
puechcirc
Movements of wild boars tracked at Puechabon
puechdesIII
Habitat Selection by the Wild Boar at Puechabon
qqchi
Quantile-Quantile Plots for Trajectories of Class 'ltraj'
rand.kselect
Test of the Third-Order Habitat Selection
randtest.enfa
Randomisation Test for the Ecological Niche Factor Analysis
redisltraj
Rediscretization of a Trajectory With Regular Step Length
rotxy
Internal Functions for Package 'adehabitat'
rupicabau
GPS Monitoring of One Chamois in the Bauges Mountains
sahrlocs2kselect
Preparation of K-Select Analysis
sahrlocs2niche
OMI Analysis of Radio-Tracking Data
scatter.enfa
Scatter Plot of the Results of the ENFA
scatterniche
Display the Niche in the Ecological Space
schoener
Compute Schoener's ratio
set.limits
Define the Same Time Limits for several Bursts in a Regular...
setmask
Applies a Mask on Objects of Class 'asc' or 'kasc'
setNA
Place Missing Values in Objects of Class 'ltraj'
sett0
Round the Timing of Collection of Relocations to Obtain...
showNAltraj
Highlighting the Patterns in Missing Values in Trajects
simm.bb
Brownian bridge motion
simm.brown
Simulate a Bivariate Brownian Motion
simm.crw
Simulation of a Correlated Random Walk
simm.levy
Simulates a Levy Walk
simm.mba
Simulation of an Arithmetic Brownian Motion
simm.mou
Simulation of a Bivariate Ornstein-Uhlenbeck Process
sliwinltr
Apply a Function on an Object of Class "ltraj", Using a...
speed
Computes the Speed Between Successive Relocations of an...
squirrel
Radio-Tracking Data of Squirrels
squirreloc
Radio-tracking of squirrels
storemapattr
Store Attributes of Maps of Class asc and kasc
subsample
Subsample a Trajectory
subsetmap
Storing a Part of a Map
teal
Teal (Anas crecca) Ring Recovery Dataset
trajdyn
Interactive Display of Objects of Class 'ltraj'
typeII2typeI
Change the Type of a Trajectory
vanoise
Habitat Use by Three Species of Galliformes in the Vanoise...
wawotest
Wald-Wolfowitz Test of Randomness
whale
Argos Monitoring of Whale Movement
which.ltraj
Identify Relocations Fullfilling a Condition in an Object of...
wi
Computation of Selection Ratios for Habitat Selection...

Files in this package

adehabitat
adehabitat/inst
adehabitat/inst/CITATION
adehabitat/inst/ascfiles
adehabitat/inst/ascfiles/aspect.txt
adehabitat/inst/ascfiles/elevation.asc
adehabitat/inst/ascfiles/aspect.asc
adehabitat/inst/doc
adehabitat/inst/doc/classes.R
adehabitat/inst/doc/classes.pdf
adehabitat/src
adehabitat/src/tests.c
adehabitat/NAMESPACE
adehabitat/demo
adehabitat/demo/nichehs.r
adehabitat/demo/rastermaps.r
adehabitat/demo/analysisltraj.r
adehabitat/demo/homerange.r
adehabitat/demo/00Index
adehabitat/demo/managltraj.r
adehabitat/data
adehabitat/data/bear.rda
adehabitat/data/ibex.rda
adehabitat/data/puechabon.rda
adehabitat/data/capreochiz.rda
adehabitat/data/whale.rda
adehabitat/data/puechcirc.rda
adehabitat/data/puech.rda
adehabitat/data/bauges.rda
adehabitat/data/lynxjura.rda
adehabitat/data/porpoise.rda
adehabitat/data/ibexraw.rda
adehabitat/data/rupicabau.rda
adehabitat/data/hseal.rda
adehabitat/data/mouflon.rda
adehabitat/data/albatross.rda
adehabitat/data/squirrel.rda
adehabitat/data/capreotf.rda
adehabitat/data/squirreloc.rda
adehabitat/data/vanoise.rda
adehabitat/data/chamois.rda
adehabitat/data/puechdesIII.rda
adehabitat/data/bighorn.rda
adehabitat/data/pheasant.rda
adehabitat/data/teal.rda
adehabitat/R
adehabitat/R/sahrlocs2niche.r
adehabitat/R/asc2spixdf.r
adehabitat/R/convnum.r
adehabitat/R/rand.kselect.r
adehabitat/R/randtest.enfa.r
adehabitat/R/typeII2typeI.r
adehabitat/R/mahasuhab.r
adehabitat/R/plot.area.r
adehabitat/R/im2asc.r
adehabitat/R/qchi.r
adehabitat/R/wawotest.ltraj.r
adehabitat/R/getkasc.r
adehabitat/R/print.dataenfa.r
adehabitat/R/simm.crw.r
adehabitat/R/plot.asc.r
adehabitat/R/buffer.ani.r
adehabitat/R/print.wiIII.r
adehabitat/R/cutltraj.r
adehabitat/R/asc2im.r
adehabitat/R/plot.ltraj.r
adehabitat/R/as.ltraj.r
adehabitat/R/fpt.r
adehabitat/R/pchi.r
adehabitat/R/simm.brown.r
adehabitat/R/image.asc.r
adehabitat/R/hist.ltraj.r
adehabitat/R/attpol2area.r
adehabitat/R/as.sahrlocs.r
adehabitat/R/kernel.area.r
adehabitat/R/getburst.r
adehabitat/R/meanfpt.r
adehabitat/R/dunnfa.r
adehabitat/R/plot.sahrlocs.r
adehabitat/R/traj2spdf.r
adehabitat/R/export.asc.r
adehabitat/R/is.sd.r
adehabitat/R/distfacmap.r
adehabitat/R/perarea.r
adehabitat/R/qqchi.default.r
adehabitat/R/hist.kasc.r
adehabitat/R/ascgen.r
adehabitat/R/schoener.rtest.r
adehabitat/R/spol2area.r
adehabitat/R/print.plotsahr.r
adehabitat/R/domain.r
adehabitat/R/sahrlocs2kselect.r
adehabitat/R/redisltraj.r
adehabitat/R/ltraj2sldf.r
adehabitat/R/setmask.r
adehabitat/R/qqnorm.ltraj.r
adehabitat/R/print.kselect.r
adehabitat/R/subsetmap.r
adehabitat/R/kernelbb.r
adehabitat/R/mcp.r
adehabitat/R/df2kasc.r
adehabitat/R/join.asc.r
adehabitat/R/print.wiI.r
adehabitat/R/print.kasc.r
adehabitat/R/getvolumeUD.r
adehabitat/R/corrXY.r
adehabitat/R/wawotest.r
adehabitat/R/morphology.r
adehabitat/R/plot.hrsize.r
adehabitat/R/count.points.id.r
adehabitat/R/buffer.line.r
adehabitat/R/print.rand.kselect.r
adehabitat/R/import.asc.r
adehabitat/R/predict.enfa.r
adehabitat/R/qqchi.ltraj.r
adehabitat/R/simm.bb.r
adehabitat/R/labcon.r
adehabitat/R/hr.rast.r
adehabitat/R/print.traj.r
adehabitat/R/image.kasc.r
adehabitat/R/spixdf2kasc.r
adehabitat/R/print.compana.r
adehabitat/R/plot.kselect.r
adehabitat/R/speed.r
adehabitat/R/ltraj2spdf.r
adehabitat/R/wawotest.default.r
adehabitat/R/lowres.asc.r
adehabitat/R/plot.kver.r
adehabitat/R/lowres.r
adehabitat/R/managNAkasc.r
adehabitat/R/storemapattr.r
adehabitat/R/qqchi.r
adehabitat/R/kasc2df.r
adehabitat/R/dchi.r
adehabitat/R/modpartltraj.r
adehabitat/R/print.wiII.r
adehabitat/R/is.regular.r
adehabitat/R/plot.wi.r
adehabitat/R/ararea.r
adehabitat/R/mcp.area.r
adehabitat/R/runsNAltraj.r
adehabitat/R/schoener.r
adehabitat/R/as.kasc.r
adehabitat/R/hbrown.r
adehabitat/R/area2dxf.r
adehabitat/R/rotxy.r
adehabitat/R/enfa.r
adehabitat/R/plotLSCV.r
adehabitat/R/as.area.r
adehabitat/R/as.traj.r
adehabitat/R/getsahrlocs.r
adehabitat/R/kselect.r
adehabitat/R/mcp.rast.r
adehabitat/R/getcontour.r
adehabitat/R/traj2sldf.r
adehabitat/R/summary.traj.r
adehabitat/R/setNA.r
adehabitat/R/widesIII.r
adehabitat/R/hist.kselect.r
adehabitat/R/area2spol.r
adehabitat/R/clusthr.r
adehabitat/R/kernelUD.r
adehabitat/R/kver2spol.r
adehabitat/R/biv.plot.r
adehabitat/R/print.enfa.r
adehabitat/R/getverticeshr.r
adehabitat/R/angles.r
adehabitat/R/plot.fipati.r
adehabitat/R/widesI.r
adehabitat/R/df2traj.r
adehabitat/R/count.points.r
adehabitat/R/offsetdate.r
adehabitat/R/which.ltraj.r
adehabitat/R/gnesfa.r
adehabitat/R/plot.traj.r
adehabitat/R/gdltraj.r
adehabitat/R/mindistkeep.r
adehabitat/R/simm.levy.r
adehabitat/R/plotltr.r
adehabitat/R/kernelkc.r
adehabitat/R/compana.r
adehabitat/R/biv.test.r
adehabitat/R/testsSD.r
adehabitat/R/buffer.r
adehabitat/R/as.asc.r
adehabitat/R/lowres.kasc.r
adehabitat/R/niche.test.r
adehabitat/R/widesII.r
adehabitat/R/getkascattr.r
adehabitat/R/join.kasc.r
adehabitat/R/rchi.r
adehabitat/R/varlogfpt.r
adehabitat/R/explore.kasc.r
adehabitat/R/getascattr.r
adehabitat/R/findmaxasc.r
adehabitat/R/debut.r
adehabitat/R/sliwinltr.r
adehabitat/R/print.asc.r
adehabitat/R/print.khr.r
adehabitat/R/sett0.r
adehabitat/R/eisera.r
adehabitat/R/scatter.enfa.r
adehabitat/R/kerneloverlap.R
adehabitat/R/kasc2spixdf.r
adehabitat/R/kplot.kselect.r
adehabitat/R/summaryNAltraj.r
adehabitat/R/image.khr.r
adehabitat/R/data2enfa.r
adehabitat/R/colasc.r
adehabitat/R/simm.mou.r
adehabitat/R/subsetmap.asc.r
adehabitat/R/traj2df.r
adehabitat/R/histniche.r
adehabitat/R/engen2008.r
adehabitat/R/profilehab.r
adehabitat/R/contour.asc.r
adehabitat/R/persp.asc.r
adehabitat/R/print.sahrlocs.r
adehabitat/R/getXYcoords.r
adehabitat/R/burst.r
adehabitat/R/simm.mba.r
adehabitat/R/subsample.r
adehabitat/R/trajdyn.r
adehabitat/R/set.limits.r
adehabitat/R/scatterniche.r
adehabitat/R/hist.enfa.r
adehabitat/R/image.sahrlocs.r
adehabitat/R/plotNAltraj.r
adehabitat/R/indmove.r
adehabitat/R/subsetmap.kasc.r
adehabitat/R/rec.r
adehabitat/R/madifa.r
adehabitat/MD5
adehabitat/DESCRIPTION
adehabitat/man
adehabitat/man/storemapattr.Rd
adehabitat/man/perarea.Rd
adehabitat/man/ibex.Rd
adehabitat/man/capreochiz.Rd
adehabitat/man/angles.Rd
adehabitat/man/as.kasc.Rd
adehabitat/man/hbrown.Rd
adehabitat/man/scatter.enfa.Rd
adehabitat/man/hr.rast.Rd
adehabitat/man/biv.test.Rd
adehabitat/man/indmove.Rd
adehabitat/man/kernelkc.Rd
adehabitat/man/kernelbb.Rd
adehabitat/man/mcp.rast.Rd
adehabitat/man/getascattr.Rd
adehabitat/man/image.asc.Rd
adehabitat/man/puechabon.Rd
adehabitat/man/subsetmap.Rd
adehabitat/man/as.traj.Rd
adehabitat/man/offsetdate.Rd
adehabitat/man/kernelUD.Rd
adehabitat/man/as.sahrlocs.Rd
adehabitat/man/explore.kasc.Rd
adehabitat/man/compana.Rd
adehabitat/man/schoener.Rd
adehabitat/man/enfa.Rd
adehabitat/man/gdltraj.Rd
adehabitat/man/kerneloverlap.Rd
adehabitat/man/puech.Rd
adehabitat/man/rotxy.Rd
adehabitat/man/albatross.Rd
adehabitat/man/kselect.Rd
adehabitat/man/plotltr.Rd
adehabitat/man/distfacmap.Rd
adehabitat/man/rupicabau.Rd
adehabitat/man/whale.Rd
adehabitat/man/wi.Rd
adehabitat/man/kver.Rd
adehabitat/man/as.ltraj.Rd
adehabitat/man/qqchi.Rd
adehabitat/man/burst.Rd
adehabitat/man/modpartltraj.Rd
adehabitat/man/c.ltraj.Rd
adehabitat/man/predict.enfa.Rd
adehabitat/man/niche.test.Rd
adehabitat/man/simm.mba.Rd
adehabitat/man/morphology.Rd
adehabitat/man/eisera.Rd
adehabitat/man/buffer.Rd
adehabitat/man/hist.ltraj.Rd
adehabitat/man/ascgen.Rd
adehabitat/man/labcon.Rd
adehabitat/man/squirreloc.Rd
adehabitat/man/speed.Rd
adehabitat/man/count.points.id.Rd
adehabitat/man/pheasant.Rd
adehabitat/man/simm.mou.Rd
adehabitat/man/sett0.Rd
adehabitat/man/image.sahrlocs.Rd
adehabitat/man/plot.area.Rd
adehabitat/man/typeII2typeI.Rd
adehabitat/man/porpoise.Rd
adehabitat/man/vanoise.Rd
adehabitat/man/simm.levy.Rd
adehabitat/man/fpt.Rd
adehabitat/man/engen2008II.Rd
adehabitat/man/clusthr.Rd
adehabitat/man/kasc2spixdf.Rd
adehabitat/man/Chi.Rd
adehabitat/man/showNAltraj.Rd
adehabitat/man/set.limits.Rd
adehabitat/man/puechcirc.Rd
adehabitat/man/hseal.Rd
adehabitat/man/subsample.Rd
adehabitat/man/join.asc.Rd
adehabitat/man/histniche.Rd
adehabitat/man/plot.ltraj.Rd
adehabitat/man/is.regular.Rd
adehabitat/man/mcp.Rd
adehabitat/man/mindistkeep.Rd
adehabitat/man/squirrel.Rd
adehabitat/man/capreotf.Rd
adehabitat/man/findmaxasc.Rd
adehabitat/man/Extract.ltraj.Rd
adehabitat/man/trajdyn.Rd
adehabitat/man/area2asc.Rd
adehabitat/man/cutltraj.Rd
adehabitat/man/asc2im.Rd
adehabitat/man/is.sd.Rd
adehabitat/man/kasc2df.Rd
adehabitat/man/mouflon.Rd
adehabitat/man/mahasuhab.Rd
adehabitat/man/dunnfa.Rd
adehabitat/man/sahrlocs2niche.Rd
adehabitat/man/import.asc.Rd
adehabitat/man/simm.crw.Rd
adehabitat/man/getXYcoords.Rd
adehabitat/man/plot.sahrlocs.Rd
adehabitat/man/sliwinltr.Rd
adehabitat/man/rand.kselect.Rd
adehabitat/man/madifa.Rd
adehabitat/man/scatterniche.Rd
adehabitat/man/setNA.Rd
adehabitat/man/which.ltraj.Rd
adehabitat/man/as.area.Rd
adehabitat/man/wawotest.Rd
adehabitat/man/gnesfa.Rd
adehabitat/man/setmask.Rd
adehabitat/man/sahrlocs2kselect.Rd
adehabitat/man/simm.bb.Rd
adehabitat/man/area2dxf.Rd
adehabitat/man/colasc.Rd
adehabitat/man/redisltraj.Rd
adehabitat/man/managNAkasc.Rd
adehabitat/man/simm.brown.Rd
adehabitat/man/randtest.enfa.Rd
adehabitat/man/ibexraw.Rd
adehabitat/man/lowres.Rd
adehabitat/man/adehabitat-package.Rd
adehabitat/man/teal.Rd
adehabitat/man/chamois.Rd
adehabitat/man/getcontour.Rd
adehabitat/man/puechdesIII.Rd
adehabitat/man/bighorn.Rd
adehabitat/man/hist.kasc.Rd
adehabitat/man/convnum.Rd
adehabitat/man/domain.Rd
adehabitat/man/bauges.Rd
adehabitat/man/lynxjura.Rd
adehabitat/man/bear.Rd