| abgdivparam | Apportionment of Parametric Indices of Diversity |
| abgevodivparam | Apportionment of Parametric Indices of Phylogenetic Diversity |
| adiv-package | Analysis of Diversity |
| aptree | Hierarchical Partitioning of Evolutionary and Ecological... |
| batcomm | Bat Abundance and Phylogeny Along a Disturbance Gradient in a... |
| betastat | Multiple-Site Dissimilarity Measure for Species... |
| betaTreeUniqueness | Plot-to-plot functional or phylogenetic dissimilarity and... |
| betaUniqueness | Algorithmic index of plot-to-plot functional (or... |
| birdData | Avian Communities along Successional Forest Gradients |
| CF | Matrices of Intra- and Inter-Specific Similarities |
| crossdpcoa | Crossed-DPCoA |
| dbMANOVAspecies | Indicator species analysis in the framework of multivariate... |
| decdiv | Decomposition of trait-based diversity along the nodes of a... |
| dislptransport | Algorithmic index of plot-to-plot functional (or... |
| dissABC | Phylogenetic and Functional Similarity between Communities |
| dissRicotta | Plot-to-Plot Functional or Phylogenetic Dissimilarity |
| distinctAb | Abundance-based measures of species' rarity, functional or... |
| distinctDis | Dissimilarity-based Species' Originality |
| distinctTopo | Topology-based Species' Originality |
| distinctTree | Tree-based Species' Originality |
| distinctUltra | Ultrametric Tree-based Species' Originality |
| distMS | Marczewski-Steinhaus Coefficient |
| divparam | Parametric Indices of Species Diversity |
| DP | Plot-to-plot functional or phylogenetic dissimilarity |
| dsimcom | Functional or Phylogenetic Similarity between Species and... |
| dspca | Double similarity principal component analysis |
| EH | Faith Phylogenetic Diversity |
| EqRao | Apportionment of Diversity |
| eveparam | Parametric Indices of Species Evenness |
| evoCA | Evolutionary Correspondence Analysis |
| evodiss | Pair-wise Phylogenetic Dissimilarities between Communities |
| evodiss_family | A Family of Indices Dedicated to Pair-wise Phylogenetic... |
| evodiv | Indices of Phylogenetic Diversity |
| evodivparam | Parametric Indices of Phylogenetic Diversity |
| evoeveparam | Parametric Indices of Phylogenetic evenness |
| evoNSCA | Evolutionary Non-Symmetric Correspondence Analysis |
| evopca | Evolutionary Principal Component analyses |
| evouniparam | Parametric Indices of Phylogenetic Uniqueness |
| FPdivparam | Parametric Indices of Functional and Phylogenetic Diversity |
| FunImbalance | Indices of functional imbalance |
| generalized_Tradidiss | Plot-to-plot dissimilarity taking account of functional... |
| K | Indices K, Kstar and Kw of Phylogenetic Signal |
| optimEH | Nee and May's Optimizing Process |
| orisaved | Maximal or Minimal Amount of Originality Saved under Optimal... |
| PADDis | Functional Dissimilarity Measures for Presence-Absence Data |
| plot.phylo4d | Plots for phylogenetic tree and data |
| qDT | Mean Diversity along a Phylogenetic Tree |
| QE | Quadratic Entropy |
| qHdiv | Biodiversity Measure that Includes Consistent Interspecific... |
| randEH | Amount of Evolutionary History Preserved when Random Species... |
| rare_Rao | Functional Rarefaction for Species Abundance Data |
| RDMCCP16 | Theoretical Data Set used in Ricotta et al. (2016) |
| Rentropy | Pavoine et al. (2017) functional or phylogenetic entropy |
| rlqESLTP | Linking Patterns in Phylogeny, Traits, Abiotic Variables and... |
| rockfish | Rockfish Phylogenetic Diversity in Southern California Bight |
| RP15EI | Theoretical Data Set used in Ricotta and Pavoine (2015) in... |
| RP15JVS | Theoretical Data Set used in Ricotta and Pavoine (2015) in... |
| RPP16EE | Theoretical Data Set used in Ricotta et al. (2016) in Ecology... |
| RutorGlacier | Functional and phylogenetic composition of plant communities... |
| speciesdiv | Indices of Species Diversity |
| specieseve | Indices of Species Evenvess |
| treeUniqueness | Community-level phylogenetic (or functional) redundancy |
| twoHmax | Maximization of the Diversity Index TwoH |
| uniqueness | Functional Uniqueness and Functional Redundancy of Biological... |
