API for admixturegraph
Admixture Graph Manipulation and Fitting
| Global functions | |
|---|---|
| add_a_leaf | Man page |
| add_an_admixture | Man page |
| add_an_admixture2 | Man page |
| add_graph_f4 | Man page |
| add_graph_f4_sign | Man page |
| admix_props | Man page |
| admixture_edge | Man page |
| admixture_proportions | Man page |
| admixturegraph-package | Man page |
| agraph | Man page |
| agraph_children | Man page |
| agraph_parents | Man page |
| agraph_weights | Man page |
| all_graphs | Man page |
| all_path_overlaps | Man page |
| all_paths | Man page |
| bears | Man page |
| build_edge_optimisation_matrix | Man page |
| burn_in | Man page |
| calculate_concentration | Man page |
| canonise_expression | Man page |
| canonise_graph | Man page |
| coef.agraph_fit | Man page |
| cost_function | Man page |
| edge | Man page |
| edge_optimisation_function | Man page |
| eight_leaves_trees | Man page |
| evaluate_f4 | Man page |
| examine_edge_optimisation_matrix | Man page |
| extract_admixture_proportion_parameters | Man page |
| extract_graph_parameters | Man page |
| extract_trees | Man page |
| f2 | Man page |
| f3 | Man page |
| f4 | Man page |
| f4stats | Man page |
| fast_fit | Man page |
| fast_plot | Man page |
| filter_on_leaves | Man page |
| fit_graph | Man page |
| fit_graph_list | Man page |
| fit_permutations_and_graphs | Man page |
| fitted.agraph_fit | Man page |
| five_leaves_graphs | Man page |
| format_path | Man page |
| four_leaves_graphs | Man page |
| get_graph_f4_sign | Man page |
| graph_environment | Man page |
| graph_to_vector | Man page |
| graphs_2_0 | Man page |
| graphs_3_0 | Man page |
| graphs_3_1 | Man page |
| graphs_4_0 | Man page |
| graphs_4_1 | Man page |
| graphs_4_2 | Man page |
| graphs_5_0 | Man page |
| graphs_5_1 | Man page |
| graphs_5_2 | Man page |
| graphs_6_0 | Man page |
| graphs_6_1 | Man page |
| graphs_6_2 | Man page |
| graphs_7_0 | Man page |
| graphs_7_1 | Man page |
| graphs_8_0 | Man page |
| is_descendant_of | Man page |
| is_negative | Man page |
| is_positive | Man page |
| is_unknown | Man page |
| is_zero | Man page |
| log_likelihood | Man page |
| log_sum_of_logs | Man page |
| make_an_outgroup | Man page |
| make_mcmc_model | Man page |
| make_permutations | Man page |
| model_bayes_factor_n | Man page |
| model_likelihood | Man page |
| model_likelihood_n | Man page |
| mynonneg | Man page |
| no_admixture_events | Man page |
| no_admixture_events.agraph | Man page |
| no_admixture_events.agraph_fit | Man page |
| no_admixture_events.agraph_fit_list | Man page |
| no_poor_fits | Man page |
| no_poor_fits.agraph_fit | Man page |
| no_poor_fits.agraph_fit_list | Man page |
| overlaps_sign | Man page |
| parent_edges | Man page |
| path_overlap | Man page |
| plot.agraph | Man page |
| plot.agraph_fit | Man page |
| plot.f4stats | Man page |
| plot_fit_1 | Man page |
| plot_fit_2 | Man page |
| poor_fits | Man page |
| poor_fits.agraph_fit | Man page |
| poor_fits.agraph_fit_list | Man page |
| print.agraph_fit | Man page |
| project_to_population | Man page |
| remove_duplicates | Man page |
| rename_nodes | Man page |
| residuals.agraph_fit | Man page |
| run_metropolis_hasting | Man page |
| seven_leaves_graphs | Man page |
| seven_leaves_trees | Man page |
| sf2 | Man page |
| sf3 | Man page |
| sf4 | Man page |
| six_leaves_graphs | Man page |
| split_population | Man page |
| split_population.agraph_fit | Man page |
| split_population.data.frame | Man page |
| sum_of_squared_errors | Man page |
| sum_of_squared_errors.agraph_fit | Man page |
| sum_of_squared_errors.agraph_fit_list | Man page |
| summary.agraph_fit | Man page |
| thinning | Man page |
| vector_to_graph | Man page |
