Global functions | |
---|---|
add_a_leaf | Man page |
add_an_admixture | Man page |
add_an_admixture2 | Man page |
add_graph_f4 | Man page |
add_graph_f4_sign | Man page |
admix_props | Man page |
admixture_edge | Man page |
admixture_proportions | Man page |
admixturegraph-package | Man page |
agraph | Man page |
agraph_children | Man page |
agraph_parents | Man page |
agraph_weights | Man page |
all_graphs | Man page |
all_path_overlaps | Man page |
all_paths | Man page |
bears | Man page |
build_edge_optimisation_matrix | Man page |
burn_in | Man page |
calculate_concentration | Man page |
canonise_expression | Man page |
canonise_graph | Man page |
coef.agraph_fit | Man page |
cost_function | Man page |
edge | Man page |
edge_optimisation_function | Man page |
eight_leaves_trees | Man page |
evaluate_f4 | Man page |
examine_edge_optimisation_matrix | Man page |
extract_admixture_proportion_parameters | Man page |
extract_graph_parameters | Man page |
extract_trees | Man page |
f2 | Man page |
f3 | Man page |
f4 | Man page |
f4stats | Man page |
fast_fit | Man page |
fast_plot | Man page |
filter_on_leaves | Man page |
fit_graph | Man page |
fit_graph_list | Man page |
fit_permutations_and_graphs | Man page |
fitted.agraph_fit | Man page |
five_leaves_graphs | Man page |
format_path | Man page |
four_leaves_graphs | Man page |
get_graph_f4_sign | Man page |
graph_environment | Man page |
graph_to_vector | Man page |
graphs_2_0 | Man page |
graphs_3_0 | Man page |
graphs_3_1 | Man page |
graphs_4_0 | Man page |
graphs_4_1 | Man page |
graphs_4_2 | Man page |
graphs_5_0 | Man page |
graphs_5_1 | Man page |
graphs_5_2 | Man page |
graphs_6_0 | Man page |
graphs_6_1 | Man page |
graphs_6_2 | Man page |
graphs_7_0 | Man page |
graphs_7_1 | Man page |
graphs_8_0 | Man page |
is_descendant_of | Man page |
is_negative | Man page |
is_positive | Man page |
is_unknown | Man page |
is_zero | Man page |
log_likelihood | Man page |
log_sum_of_logs | Man page |
make_an_outgroup | Man page |
make_mcmc_model | Man page |
make_permutations | Man page |
model_bayes_factor_n | Man page |
model_likelihood | Man page |
model_likelihood_n | Man page |
mynonneg | Man page |
no_admixture_events | Man page |
no_admixture_events.agraph | Man page |
no_admixture_events.agraph_fit | Man page |
no_admixture_events.agraph_fit_list | Man page |
no_poor_fits | Man page |
no_poor_fits.agraph_fit | Man page |
no_poor_fits.agraph_fit_list | Man page |
overlaps_sign | Man page |
parent_edges | Man page |
path_overlap | Man page |
plot.agraph | Man page |
plot.agraph_fit | Man page |
plot.f4stats | Man page |
plot_fit_1 | Man page |
plot_fit_2 | Man page |
poor_fits | Man page |
poor_fits.agraph_fit | Man page |
poor_fits.agraph_fit_list | Man page |
print.agraph_fit | Man page |
project_to_population | Man page |
remove_duplicates | Man page |
rename_nodes | Man page |
residuals.agraph_fit | Man page |
run_metropolis_hasting | Man page |
seven_leaves_graphs | Man page |
seven_leaves_trees | Man page |
sf2 | Man page |
sf3 | Man page |
sf4 | Man page |
six_leaves_graphs | Man page |
split_population | Man page |
split_population.agraph_fit | Man page |
split_population.data.frame | Man page |
sum_of_squared_errors | Man page |
sum_of_squared_errors.agraph_fit | Man page |
sum_of_squared_errors.agraph_fit_list | Man page |
summary.agraph_fit | Man page |
thinning | Man page |
vector_to_graph | Man page |
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