No-U-Turn MCMC Sampling for 'ADMB' and 'TMB' Models

adnuts | adnuts: No-U-turn sampling for Template Model Builder and AD... |

check_identifiable | Check identifiability from model Hessian |

dot-getADMBHessian | Read in admodel.hes file |

extract_sampler_params | Extract sampler parameters from a fit. |

extract_samples | Extract posterior samples from a model fit. |

launch_shinyadmb | Launch shinystan for an ADMB fit. |

launch_shinytmb | Launch shinystan for a TMB fit. |

pairs_admb | Plot pairwise parameter posteriors and optionally the MLE... |

sample_admb | Bayesian inference of an ADMB model using the no-U-turn... |

sample_admb_nuts | Run a single NUTS chain for an ADMB model |

sample_admb_rwm | Run a single random walk Metropolis chain for an ADMB model |

sample_inits | Function to generate random initial values from a previous... |

sample_tmb | Bayesian inference of a TMB model using the no-U-turn... |

sample_tmb_hmc | Draw MCMC samples from a model posterior using a static HMC... |

sample_tmb_nuts | Draw MCMC samples from a model posterior using the No-U-Turn... |

sample_tmb_rwm | [Deprecated] Draw MCMC samples from a model posterior using a... |

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