knitr::opts_chunk$set( collapse = TRUE, comment = "#>" )
The design philosophy of [aggreCAT]{.pkg} is principled on 'tidy' data
[@Wickham:2014vp]. Each aggregation method expects a
[data.frame]{.class} or [tibble]{.class} of judgements (data_ratings)
as its input, and returns a [tibble]{.class} containing the variables
method, paper_id, cs and n_experts (see @sec-AverageWAgg for
illustration of outputs); where method is a character vector
corresponding to the aggregation method name specified in the type
argument. Each aggregation is applied as a summary function
[@Wickham2017R], and therefore returns a single row or observation with
a single confidence score cs for each claim or paper_id. The number
of expert judgements summarised in the aggregated confidence score is
returned in the column n_experts. Because of the tidy nature of the
aggregation outputs, multiple aggregations can be applied to the same
data with the results of all aggregation methods row bound together in a
single tibble (See the example repliCATS workflow in @sec-workflow).
The tibble of judgements to be aggregated (data_ratings) requires the
columns round, paper_id, user_name, question, element, value
and group. Each observation in the judgement data corresponds to a
single value for a single question elicited from a single
user_name about a given paper_id in a single round. There are four
types of questions that elicited values correspond to. Estimates
about the event probability for a given paper_id correspond to
"direct_replication" in the question variable. The type of estimate
the value belongs to is recorded in the element variable, and may be
one of "three_point_lower", "three_point_best", or
"three_point_upper".
Every aggregation function requires at least one value derived from
three-point elicitation (question == "direct_replication") in the
dataframe supplied to the expert_judgements argument, however, some
methods require only the best-estimates
(element == "three_point_best") for mathematical aggregation.
Similarly some aggregation methods require multiple rounds of
judgements, while others require only a single round. Only the
aggregation method CompWAgg requires values for the comprehension
question. For a summary of each aggregation method, its calling function
and data requirements and sources, see @tbl-method-summary-table.
library(aggreCAT)
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