plot_progression: Graphical representation of maintenance therapy data for...

In allMT: Acute Lymphoblastic Leukemia Maintenance Therapy Analysis

Graphical representation of maintenance therapy data for single patient

Description

Creates a line graph (trends) for absolute neutrophil count (ANC), 6-Mercaptopurine (6MP) and Methotrexate (MTX) doses across all visits for the given patient

Usage

plot_progression(input_file_path, anc_range, unit)

Arguments

input_file_path	Path to input csv file for the patient (in quotes)
anc_range	ANC target range as per the protocol: (c(lower threshold, upper threshold)). NOTE: Ensure that units are the same as unit of ANC in the input data.
unit	Choose either "million" or "billion". "million" = million cells/L (x10^{6} cells/L or cells/\mul) "billion" = billion cells/L (x10^{9} cells/L or x10^{3} cells/\mul)

Value

plot image

Note

• If there is only one threshold for anc_range parameter, please specify the respective value and keep the other threshold as NA. eg : c(2000, NA)

• Horizontal dotted lines on the graph indicate anc_range thresholds and starting doses for 6MP and MTX as a reference (colour coded to corresponding parameter)

See Also

summarize_cycle_progression()

Examples

pat_data = system.file("extdata/processed_data/", "UPN_915.csv", package = "allMT")
plot_progression(input_file_path = pat_data, anc_range = c(0.75,1.5), unit = "billion")


# As per BFM protocol (Reference PMID - 15902295):
plot_progression(input_file_path = "../UPN1.csv", anc_range = c(2, NA), unit = "billion")

# As per St Jude protocol (Reference PMID - 15902295):
plot_progression(input_file_path = "../../UPN1.csv", anc_range = c(0.3, 1), unit = "billion")

allMT documentation built on April 21, 2023, 1:08 a.m.