check_names: Amanida harmonization

In amanida: Meta-Analysis for Non-Integral Data

Amanida harmonization

Description

check_names check the names to harmonize them to a common nomenclature. Valid names are: chemical name, InChI, InChIKey and SMILES.

Usage

check_names(data)

Arguments

data	data imported using amanida_read function

Details

Note that check_names depends on webchempackage and it slows down the process.

Formats compatible are amanida_read output

Value

tibble table with data imported with PubChem ID retrieved

Examples

## Not run: 
coln <-  c("Compound Name", "P-value", "Fold-change", "N total", "References")
input_file <- getsampleDB()
datafile <- amanida_read(input_file, mode = "quan", coln, separator=";")

data_checked <- check_names(datafile) 

## End(Not run)

amanida documentation built on May 29, 2024, 8:38 a.m.