amei: Adaptive Management of Epidemiological Interventions

This package provides a flexible statistical framework for generating optimal epidemiological interventions that are designed to minimize the total expected cost of an emerging epidemic while simultaneously propagating uncertainty regarding underlying disease parameters through to the decision process via Bayesian posterior inference. The strategies produced through this framework are adaptive: vaccination schedules are iteratively adjusted to reflect the anticipated trajectory of the epidemic given the current population state and updated parameter estimates.

Install the latest version of this package by entering the following in R:
install.packages("amei")
AuthorDaniel Merl <danmerl@gmail.com>, Leah R. Johnson <lrjohnson@uchicago.edu>, Robert B. Gramacy <rbgramacy@chicagobooth.edu>, and Marc S. Mangel <msmangel@ams.ucsc.edu>
Date of publication2013-12-13 21:57:38
MaintainerRobert B. Gramacy <rbgramacy@chicagobooth.edu>
LicenseGPL
Version1.0-7

View on CRAN

Functions

amei Man page
amei-package Man page
epi.gibbs.mu Man page
epi.gibbs.nu Man page
epi.log.post.b Man page
epi.log.post.k Man page
epimanage Man page
epistep Man page
epi.update.prime Man page
epi.update.soln Man page
getcost Man page
getpolicy Man page
getvac Man page
init.soln Man page
manage Man page
MCepi Man page
MCmanage Man page
mcmc.bknumu Man page
optvac Man page
PlotCosts Man page
PlotEpi Man page
plot.epiman Man page
plot.MCepi Man page
plot.optvac Man page
PlotParams Man page
print.epiman Man page
print.MCepi Man page
print.optvac Man page
print.summary.epiman Man page
print.summary.MCepi Man page
print.summary.optvac Man page
propose Man page
SimulateEpidemic Man page
SimulateEpidemicQuantiles Man page
SimulateManagementQuantiles Man page
summary.epiman Man page
summary.MCepi Man page
summary.optvac Man page
theta Man page
TimeSeriesOfDensities Man page
TimeSeriesOfDensity Man page
vaccinate Man page
VarStopTimePolicy Man page

Files

inst
inst/CITATION
inst/doc
inst/doc/alt_trans.iRnw
inst/doc/amei.Rnw
inst/doc/pnas_mcmanage.iRnw
inst/doc/pnas.iRnw
inst/doc/amei.pdf
src
src/matrix.c
src/Makevars
src/epidemics.c
src/ssdiff.c
src/ssdiff.h
src/state.h
src/state.c
src/epidemics.h
src/matrix.h
NAMESPACE
demo
demo/amei.R
demo/00Index
R
R/manage.R R/MC_util.R R/MC.R R/plots.R R/print.R R/plot_util.R R/epi_mcmc.R
vignettes
vignettes/alt_trans.iRnw
vignettes/amei.Rnw
vignettes/pnas_mcmanage.iRnw
vignettes/pnas.iRnw
vignettes/jsslogo.jpg
vignettes/amei.bib
MD5
DESCRIPTION
ChangeLog
man
man/getcost.Rd man/getpolicy.Rd man/amei-internal.Rd man/plot.optvac.Rd man/epistep.Rd man/plot.epiman.Rd man/MCepi.Rd man/MCmanage.Rd man/amei-package.Rd man/print.Rd man/manage.Rd man/optvac.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.