amei: Adaptive Management of Epidemiological Interventions

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This package provides a flexible statistical framework for generating optimal epidemiological interventions that are designed to minimize the total expected cost of an emerging epidemic while simultaneously propagating uncertainty regarding underlying disease parameters through to the decision process via Bayesian posterior inference. The strategies produced through this framework are adaptive: vaccination schedules are iteratively adjusted to reflect the anticipated trajectory of the epidemic given the current population state and updated parameter estimates.

Author
Daniel Merl <danmerl@gmail.com>, Leah R. Johnson <lrjohnson@uchicago.edu>, Robert B. Gramacy <rbgramacy@chicagobooth.edu>, and Marc S. Mangel <msmangel@ams.ucsc.edu>
Date of publication
2013-12-13 21:57:38
Maintainer
Robert B. Gramacy <rbgramacy@chicagobooth.edu>
License
GPL
Version
1.0-7

View on CRAN

Man pages

amei-internal
Internal amei Functions
amei-package
Adaptive Management of Epidemiological Interventions
epistep
Evolve One Step of an Epidemic in Time
getcost
Extract the Final Costs/Number of Vaccinations of the...
getpolicy
Extract The Optimal Static Vaccination Policy
manage
Adaptive Management of Epidemiological Interventions
MCepi
Monte Carlo Epidemic Simulation with Static Vaccination
MCmanage
Monte Carlo Epidemic Simulation with Adaptive Vaccination
optvac
Optimal (Static) Vaccination Policy
plot.epiman
Plotting Epidemic Trajectories and Costs
plot.optvac
Plotting Vaccination Cost Surfaces
print
Summarizing and printing amei output

Files in this package

amei
amei/inst
amei/inst/CITATION
amei/inst/doc
amei/inst/doc/alt_trans.iRnw
amei/inst/doc/amei.Rnw
amei/inst/doc/pnas_mcmanage.iRnw
amei/inst/doc/pnas.iRnw
amei/inst/doc/amei.pdf
amei/src
amei/src/matrix.c
amei/src/Makevars
amei/src/epidemics.c
amei/src/ssdiff.c
amei/src/ssdiff.h
amei/src/state.h
amei/src/state.c
amei/src/epidemics.h
amei/src/matrix.h
amei/NAMESPACE
amei/demo
amei/demo/amei.R
amei/demo/00Index
amei/R
amei/R/manage.R
amei/R/MC_util.R
amei/R/MC.R
amei/R/plots.R
amei/R/print.R
amei/R/plot_util.R
amei/R/epi_mcmc.R
amei/vignettes
amei/vignettes/alt_trans.iRnw
amei/vignettes/amei.Rnw
amei/vignettes/pnas_mcmanage.iRnw
amei/vignettes/pnas.iRnw
amei/vignettes/jsslogo.jpg
amei/vignettes/amei.bib
amei/MD5
amei/DESCRIPTION
amei/ChangeLog
amei/man
amei/man/getcost.Rd
amei/man/getpolicy.Rd
amei/man/amei-internal.Rd
amei/man/plot.optvac.Rd
amei/man/epistep.Rd
amei/man/plot.epiman.Rd
amei/man/MCepi.Rd
amei/man/MCmanage.Rd
amei/man/amei-package.Rd
amei/man/print.Rd
amei/man/manage.Rd
amei/man/optvac.Rd