amei: Adaptive Management of Epidemiological Interventions

This package provides a flexible statistical framework for generating optimal epidemiological interventions that are designed to minimize the total expected cost of an emerging epidemic while simultaneously propagating uncertainty regarding underlying disease parameters through to the decision process via Bayesian posterior inference. The strategies produced through this framework are adaptive: vaccination schedules are iteratively adjusted to reflect the anticipated trajectory of the epidemic given the current population state and updated parameter estimates.

AuthorDaniel Merl <danmerl@gmail.com>, Leah R. Johnson <lrjohnson@uchicago.edu>, Robert B. Gramacy <rbgramacy@chicagobooth.edu>, and Marc S. Mangel <msmangel@ams.ucsc.edu>
Date of publication2013-12-13 21:57:38
MaintainerRobert B. Gramacy <rbgramacy@chicagobooth.edu>
LicenseGPL
Version1.0-7

View on CRAN

Functions

amei Man page
amei-package Man page
epi.gibbs.mu Man page
epi.gibbs.nu Man page
epi.log.post.b Man page
epi.log.post.k Man page
epimanage Man page
epistep Man page
epi.update.prime Man page
epi.update.soln Man page
getcost Man page
getpolicy Man page
getvac Man page
init.soln Man page
manage Man page
MCepi Man page
MCmanage Man page
mcmc.bknumu Man page
optvac Man page
PlotCosts Man page
PlotEpi Man page
plot.epiman Man page
plot.MCepi Man page
plot.optvac Man page
PlotParams Man page
print.epiman Man page
print.MCepi Man page
print.optvac Man page
print.summary.epiman Man page
print.summary.MCepi Man page
print.summary.optvac Man page
propose Man page
SimulateEpidemic Man page
SimulateEpidemicQuantiles Man page
SimulateManagementQuantiles Man page
summary.epiman Man page
summary.MCepi Man page
summary.optvac Man page
theta Man page
TimeSeriesOfDensities Man page
TimeSeriesOfDensity Man page
vaccinate Man page
VarStopTimePolicy Man page

Files

amei
amei/inst
amei/inst/CITATION
amei/inst/doc
amei/inst/doc/alt_trans.iRnw
amei/inst/doc/amei.Rnw
amei/inst/doc/pnas_mcmanage.iRnw
amei/inst/doc/pnas.iRnw
amei/inst/doc/amei.pdf
amei/src
amei/src/matrix.c
amei/src/Makevars
amei/src/epidemics.c
amei/src/ssdiff.c
amei/src/ssdiff.h
amei/src/state.h
amei/src/state.c
amei/src/epidemics.h
amei/src/matrix.h
amei/NAMESPACE
amei/demo
amei/demo/amei.R
amei/demo/00Index
amei/R
amei/R/manage.R amei/R/MC_util.R amei/R/MC.R amei/R/plots.R amei/R/print.R amei/R/plot_util.R amei/R/epi_mcmc.R
amei/vignettes
amei/vignettes/alt_trans.iRnw
amei/vignettes/amei.Rnw
amei/vignettes/pnas_mcmanage.iRnw
amei/vignettes/pnas.iRnw
amei/vignettes/jsslogo.jpg
amei/vignettes/amei.bib
amei/MD5
amei/DESCRIPTION
amei/ChangeLog
amei/man
amei/man/getcost.Rd amei/man/getpolicy.Rd amei/man/amei-internal.Rd amei/man/plot.optvac.Rd amei/man/epistep.Rd amei/man/plot.epiman.Rd amei/man/MCepi.Rd amei/man/MCmanage.Rd amei/man/amei-package.Rd amei/man/print.Rd amei/man/manage.Rd amei/man/optvac.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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