calc_pseudo_comp: Calculate the pseudo amino acid composition

In ampir: Predict Antimicrobial Peptides

Description

This function is adapted from the extractPAAC function from the protr package (https://github.com/nanxstats/protr)

Usage

calc_pseudo_comp(seq, lambda_min = 4, lambda_max = 19)

Arguments

seq	A vector of protein sequences as character strings
lambda_min	Minimum allowable lambda. It is an error to provide a protein sequence shorter than lambda_min+1
lambda_max	For each sequence lambda will be set to one less than the sequence length or lambda_max, whichever is smaller

References

Nan Xiao, Dong-Sheng Cao, Min-Feng Zhu, and Qing-Song Xu. (2015). protr/ProtrWeb: R package and web server for generating various numerical representation schemes of protein sequences. Bioinformatics 31 (11), 1857-1859.

ampir documentation built on June 29, 2021, 9:09 a.m.