artRun: Runs the regression test

In amregtest: Runs Allelematch Regression Tests

Runs the regression test

Description

Runs allelematch regression tests to make sure it is backwards compatible.

The full set of tests will take a couple of minutes.

Call artList to see the available tests with without running them.

Usage

artRun(filter = "", verbose = TRUE)

Arguments

filter	If specified, only tests with names matching this perl regular expression will be executed. Character vector of length 1. See also artList
verbose	logical. If TRUE, prints version of tested allelematch to stdout

Details

If any of the test executed with artRun should fail, then we want to be able to run that specific test under the debugger. Character vector of length one.

Set a breakpoint in allelematch.R and call artRun(filter="<the test that reproduces the problem>")

Note that it is the last installed version of allelematch that will be executed, not the last edited. In RStudio, CTRL+SHIFT+B will build and install.

Value

A list (invisibly) containing data about the test results as returned by testthat::test_package

See Also

artVersion and artList

Examples

# See what version of packages 'allelematch' and 'amregtest'
# are currently installed:
artVersion()

# List the available tests:
artList()

# Run all the tests:
# artRun()  # Takes several minutes

# Run the first of the available tests:
artRun(filter="allelematch_1-amDataset$")

amregtest documentation built on May 29, 2024, 4:04 a.m.