Man pages for anovir
Analysis of Virulence
| anovir-package | anovir: Analysis of Virulence |
| av_long_infected | Average longevity: estimate for infected hosts |
| av_long_uninfected | Average longevity: estimate for uninfected hosts |
| check_data | Checks data are correctly described for models |
| conf_ints_virulence | Approximate 95% confidence intervals for virulence |
| data_blanford | Full data from Blanford et al (2012) |
| data_lorenz | A subset of data from Lorenz & Koella (2011) |
| data_parker | Full data from Parker et al (2014) |
| etd_infected | Expected time of death: infected hosts |
| etd_uninfected | Expected time of death: uninfected hosts |
| nll_basic | Negative log-likelihood function: basic model |
| nll_basic_logscale | Negative log-likelihood function: basic model on logscale |
| nll_controls | Negative log-likelihood function: control data only |
| nll_exposed_infected | Negative log-likelihood function: exposed-infected |
| nll_frailty | Negative log-likelihood function: frailty |
| nll_frailty_correlated | Negative log-likelihood function: correlated frailty model |
| nll_frailty_logscale | Negative log-likelihood function: frailty variables on... |
| nll_frailty_shared | Negative log-likelihood function: frailty shared |
| nll_proportional_virulence | Negative log-likelihood function: nll proportional virulence |
| nll_recovery | Negative log-likelihood function: recovery model |
| nll_recovery_II | Negative log-likelihood function: recovery model, no... |
| nll_two_inf_subpops_obs | Negative log-likelihood function: two observed subpopulations... |
| nll_two_inf_subpops_unobs | Negative log-likelihood function: two unobserved... |
| recovery_data | Simulated recovery data |
| recovery_data_II | Simulated recovery data, with no background mortality |
| sim_data_nll_basic | Function simulating survival data for nll_basic |
