substitution: Substitution matrices.
In aphid: Analysis with Profile Hidden Markov Models
substitution R Documentation
Substitution matrices.
Description
A dataset containing several popular substitution scoring matrices
for DNA and amino acids.
Usage
substitution
Format
A list of 71 matrices, most of which have 24 rows and 24 columns
corresponding to the 20-letter amino acid alphabet plus the ambiguity codes B, Z,
X and *:
- PAM
the PAM matrices from PAM10 to PAM500.
- BLOSUM
the BLOSUM matrices from BLOSUM30 to BLOSUM100.
- others
also included are the DAYHOFF, GONNET, IDENTITY
and MATCH substitution matrices for amino acids,
and the NUC.4.2 and NUC.4.4 substitution matrices for DNA.
Source
aphid documentation built on Dec. 5, 2022, 9:06 a.m.
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| substitution | R Documentation |
Substitution matrices.
Description
A dataset containing several popular substitution scoring matrices for DNA and amino acids.
Usage
substitution
Format
A list of 71 matrices, most of which have 24 rows and 24 columns corresponding to the 20-letter amino acid alphabet plus the ambiguity codes B, Z, X and *:
- PAM
the PAM matrices from PAM10 to PAM500.
- BLOSUM
the BLOSUM matrices from BLOSUM30 to BLOSUM100.
- others
also included are the DAYHOFF, GONNET, IDENTITY and MATCH substitution matrices for amino acids, and the NUC.4.2 and NUC.4.4 substitution matrices for DNA.
Source
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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