apmsWAPP provides a complete workflow for the analysis of AP-MS data (replicate single-bait purifications including negative controls) based on spectral counts. It comprises pre-processing, scoring and postprocessing of protein interactions. A final list of interaction candidates is reported: it provides a ranking of the candidates according to their p-values which allow estimating the number of false-positive interactions.
|Date of publication||2014-04-22 14:39:54|
|Maintainer||Martina Fischer <firstname.lastname@example.org>|
apmsWAPP-internal: internal functions
apmsWAPP-package: Pre- and Postprocessing for AP-MS data analysis
int_mat: Format transformation of spectral counts
norm.inttable: Normalization of spectral count data
saint_permF: Pre- and Postprocessing for AP-MS data analysis using SAINT
tspm_apms: Workflow for AP-MS data analysis using TSPM
varFilter: Filtering of AP-MS data
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