apmsWAPP: Pre- and Postprocessing for AP-MS data analysis based on spectral counts

apmsWAPP provides a complete workflow for the analysis of AP-MS data (replicate single-bait purifications including negative controls) based on spectral counts. It comprises pre-processing, scoring and postprocessing of protein interactions. A final list of interaction candidates is reported: it provides a ranking of the candidates according to their p-values which allow estimating the number of false-positive interactions.

Install the latest version of this package by entering the following in R:
install.packages("apmsWAPP")
AuthorMartina Fischer
Date of publication2014-04-22 14:39:54
MaintainerMartina Fischer <fischerm@rki.de>
LicenseLGPL-3
Version1.0

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