edit_apsimx_replacement: Edit a replacement component in an .apsimx (JSON) file

In apsimx: Inspect, Read, Edit and Run 'APSIM' "Next Generation" and 'APSIM' Classic

Edit a replacement component in an .apsimx (JSON) file

Description

edit the replacement componenet of an JSON apsimx file. It does not replace the GUI, but it can save time by quickly editing parameters and values.

Usage

edit_apsimx_replacement(
  file = "",
  src.dir = ".",
  wrt.dir = ".",
  node = NULL,
  node.child = NULL,
  node.subchild = NULL,
  node.subsubchild = NULL,
  node.sub3child = NULL,
  node.sub4child = NULL,
  node.sub5child = NULL,
  node.string = NULL,
  root = list("Models.Core.Replacements", NA),
  parm = NULL,
  value = NULL,
  overwrite = FALSE,
  edit.tag = "-edited",
  verbose = TRUE,
  grep.options
)

Arguments

file	file ending in .apsimx to edit (JSON)
src.dir	directory containing the .apsimx file; defaults to the current working directory
wrt.dir	should be used if the destination directory is different from the src.dir
node	specific node to edit
node.child	specific node child component to edit.
node.subchild	specific node sub-child to edit.
node.subsubchild	specific node sub-subchild to edit.
node.sub3child	specific node sub-sub-subchild to edit.
node.sub4child	specific node sub-sub-sub-subchild to edit.
node.sub5child	specific node sub-sub-sub-sub-subchild to edit.
node.string	passing of a string instead of the node hierarchy. It can either start with a dot or not. However, the ‘best’ form is not to start with a dot as it should be a more convenient form of passing the nodes and their childs and not a real ‘jsonpath’.
root	‘root’ node to explore (default = “Models.Core.Replacements”)
parm	specific parameter to edit
value	new values for the parameter
overwrite	logical; if TRUE the old file is overwritten, a new file is written otherwise
edit.tag	if the file is edited a different tag from the default ‘-edited’ can be used.
verbose	whether to print information about successful edit
grep.options	Additional options for grep. To be passed as a list.

Details

This is simply a script that prints the relevant parameters which are likely to need editing. It does not print all information from an .apsimx file.

Value

(when verbose=TRUE) complete file path to edited .apsimx file is returned as a character string. As a side effect this function creates a new (JSON) .apsimx file.

Note

The components that can be edited are restricted becuase this is better in preventing errors of editing unintended parts of the file.

Examples

extd.dir <- system.file("extdata", package = "apsimx")
## Writing to a temp directory, but change as needed
tmp.dir <- tempdir()

## Inspect original values
inspect_apsimx_replacement("MaizeSoybean.apsimx", 
                           src.dir = extd.dir,
                           node = "Maize", 
                           node.child = "Phenology",
                           node.subchild = "ThermalTime", 
                           node.subsubchild = "BaseThermalTime",
                           node.sub3child = "Response")

edit_apsimx_replacement("MaizeSoybean.apsimx", 
                        src.dir = extd.dir, wrt.dir = tmp.dir,
                        node = "Maize", 
                        node.child = "Phenology",
                        node.subchild = "ThermalTime", 
                        node.subsubchild = "BaseThermalTime",
                        node.sub3child = "Response",
                        parm = "X",
                        value = c(10, 20, 30, 40, 50)) 
## inspect it
inspect_apsimx_replacement("MaizeSoybean-edited.apsimx", 
                           src.dir = tmp.dir,
                           node = "Maize", 
                           node.child = "Phenology",
                           node.subchild = "ThermalTime", 
                           node.subsubchild = "BaseThermalTime",
                           node.sub3child = "Response")

## Illustrating using 'node.string'
## Equivalent to the code to edit above

edit_apsimx_replacement("MaizeSoybean-edited.apsimx", 
                        src.dir = tmp.dir, wrt.dir = tmp.dir,
                        node.string = "Maize.Phenology.ThermalTime.BaseThermalTime.Response",
                        parm = "X",
                        value = c(11, 21, 31, 41, 51),
                        edit.tag = "-ns") 
                        
inspect_apsimx_replacement("MaizeSoybean-edited-ns.apsimx", 
                           src.dir = tmp.dir,
                           node = "Maize", 
                           node.child = "Phenology",
                           node.subchild = "ThermalTime", 
                           node.subsubchild = "BaseThermalTime",
                           node.sub3child = "Response")

apsimx documentation built on March 18, 2022, 7:52 p.m.