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aptg: Automatic Phylogenetic Tree Generator
Generates phylogenetic trees and distance matrices from a list of taxon names, or from a higher taxon expanded down to a chosen lower rank. Trees are obtained as induced subtrees of the Open Tree of Life synthetic tree using the 'rotl' package (Michonneau, Brown and Winter, 2016, <doi:10.1111/2041-210X.12593>). Expansion of a higher taxon to its descendants uses 'taxize' (Chamberlain and Szocs, 2013, <doi:10.12688/f1000research.2-191.v2>).
Getting started
Browse package contents
Package details |
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| Author | Christophe Benjamin [aut, cre] |
| Maintainer | Christophe Benjamin <christophe.benjamin@protonmail.com> |
| License | MIT + file LICENSE |
| Version | 0.4.0 |
| URL | https://github.com/christophebenjamin/aptg |
| Package repository | View on CRAN |
| Installation |
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