doCBS | R Documentation |
Performs Circular Binary Segmentation (CBS) on a data set for one or more chip types.
## Default S3 method: doCBS(dataSet, tags=NULL, chipTypes, arrays=NULL, ..., verbose=FALSE) ## S3 method for class 'CopyNumberDataSet' doCBS(ds, arrays=NULL, ...) ## S3 method for class 'CopyNumberDataSetTuple' doCBS(dsTuple, arrays=NULL, ..., verbose=FALSE)
ds, dsTuple, dataSet |
A |
tags |
An optional |
chipTypes |
A |
arrays |
An optional |
... |
Additional arguments passed to |
verbose |
A |
Returns the output dataset of CbsModel
.
Henrik Bengtsson
## Not run: dataSet <- "GSE20939" tags <- "ACC,-XY,BPN,-XY,RMA,FLN,-XY" chipTypes <- c("Mapping250K_Nsp", "Mapping250K_Sty") fit <- doCBS(dataSet, tags=tags, chipTypes=chipTypes, verbose=-10) print(fit) ## End(Not run)
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