aster: Aster Models
Version 0.9.1

Aster models are exponential family regression models for life history analysis. They are like generalized linear models except that elements of the response vector can have different families (e. g., some Bernoulli, some Poisson, some zero-truncated Poisson, some normal) and can be dependent, the dependence indicated by a graphical structure. Discrete time survival analysis, zero-inflated Poisson regression, and generalized linear models that are exponential family (e. g., logistic regression and Poisson regression with log link) are special cases. Main use is for data in which there is survival over discrete time periods and there is additional data about what happens conditional on survival (e. g., number of offspring). Uses the exponential family canonical parameterization (aster transform of usual parameterization).

Browse man pages Browse package API and functions Browse package files

AuthorCharles J. Geyer <charlie@stat.umn.edu>.
Date of publication2017-03-15 09:04:36
MaintainerCharles J. Geyer <charlie@stat.umn.edu>
LicenseMIT + file LICENSE
Version0.9.1
URL http://www.stat.umn.edu/geyer/aster/
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("aster")

Man pages

anova.asterOrReaster: Analysis of Deviance for Reaster Model Fits
aphid: Life History Data on Uroleucon rudbeckiae
aster: Aster Models
chamae: Life History Data on Chamaecrista fasciculata
chamae2: Life History Data on Chamaecrista fasciculata
chamae3: Life History Data on Chamaecrista fasciculata
echin2: Life History Data on Echinacea angustifolia
echinacea: Life History Data on Echinacea angustifolia
families: Families for Aster Models
mlogl: Minus Log Likelihood for Aster Models
newpickle: Penalized Quasi-Likelihood for Aster Models
oats: Life History Data on Avena barbata
penmlogl: Penalized Minus Log Likelihood for Aster Models
pickle: Penalized Quasi-Likelihood for Aster Models
predict.aster: Predict Method for Aster Model Fits
quickle: Penalized Quasi-Likelihood for Aster Models
radish: Life History Data on Raphanus sativus
raster: Aster Model Simulation
reaster: Aster Models with Random Effects
sim: Simulated Life History Data
summary.aster: Summarizing Aster Model Fits
summary.reaster: Summarizing Aster Model with Random Effects Fits
transform: Transform between Aster Model Parameterizations
truncated: K-Truncated Distributions

Functions

anova.aster Man page Source code
anova.asterOrReaster Man page Source code
anova.asterlist Source code
anova.reaster Man page Source code
anova.reasterlist Source code
anovaAsterOrReasterList Man page Source code
aphid Man page
as.character.astfam Source code
aster Man page Source code
aster.default Man page Source code
aster.formula Man page Source code
astertransform Man page Source code
beta.true Man page
chamae Man page
chamae2 Man page
chamae3 Man page
checkargs Source code
checkargs3part1 Source code
checkargs3part2 Source code
clearfam Source code
echin2 Man page
echinacea Man page
fam Man page
fam.bernoulli Man page Source code
fam.default Man page Source code
fam.negative.binomial Man page Source code
fam.normal.location Man page Source code
fam.poisson Man page Source code
fam.truncated.negative.binomial Man page Source code
fam.truncated.poisson Man page Source code
famfun Man page Source code
families Man page
getfam Source code
getsupfam Source code
getsupfambyname Source code
is.zero Source code
ladata Man page
makezwz Man page Source code
mlogl Man page Source code
mloglhelper Source code
mu.true Man page
newpickle Man page Source code
oats Man page
penmlogl Man page Source code
penmlogl2 Man page Source code
phi.true Man page
pickle Man page Source code
pickle1 Man page Source code
pickle2 Man page Source code
pickle3 Man page Source code
pickleHelper Source code
pred Man page
predict.aster Man page Source code
predict.aster.formula Man page Source code
print.astfam Source code
print.summary.aster Man page Source code
print.summary.reaster Man page Source code
quickle Man page Source code
radish Man page
raster Man page Source code
reaster Man page Source code
reaster.default Man page Source code
reaster.formula Man page Source code
redata Man page
rktnb Man page Source code
rktp Man page Source code
rnzp Man page Source code
setfam Source code
sim Man page
summary.aster Man page Source code
summary.reaster Man page Source code
theta.true Man page
truncated Man page
vars Man page

Files

inst
inst/doc
inst/doc/re.Rnw
inst/doc/trunc.R
inst/doc/design.tex
inst/doc/design.pdf
inst/doc/ktp.tex
inst/doc/trunc.Rnw
inst/doc/tutor.Rnw
inst/doc/tutor.pdf
inst/doc/ktp.pdf
inst/doc/linkingTo.pdf
inst/doc/re.pdf
inst/doc/tutor.R
inst/doc/linkingTo.Rnw
inst/doc/trunc.pdf
inst/include
inst/include/mlogl-export.h
tests
tests/fampoi.R
tests/famnzp.R
tests/aster.Rout.save
tests/reaster.rda
tests/penmlogl.Rout.save
tests/quickle.Rout.save
tests/newfam.R
tests/gradmat.R
tests/aster.rda
tests/predict.rda
tests/aster.R
tests/quickle.R
tests/predict.Rout.save
tests/ktp.Rout.save
tests/famnzp.Rout.save
tests/foobar.Rout.save
tests/reaster.R
tests/nzp.R
tests/reaster-warn.R
tests/cache.Rout.save
tests/quickle.rda
tests/formula.rda
tests/pickle.R
tests/formula.R
tests/predict.R
tests/famtnb.R
tests/matops.Rout.save
tests/pickle.rda
tests/mlogl-unco.R
tests/mlogl-cond.Rout.save
tests/reaster1.Rout.save
tests/pickle.Rout.save
tests/reaster1.R
tests/ktp.R
tests/foobar.Rdata
tests/cache.R
tests/raster.R
tests/matops.R
tests/trans.Rout.save
tests/fampoi.Rout.save
tests/nzp.rda
tests/mlogl-c-export.R
tests/ktp.rda
tests/mlogl-cond.R
tests/newpickle.Rout.save
tests/ktnb.R
tests/mlogl-c-export.Rout.save
tests/famber.R
tests/chk.Rout.save
tests/famnorloc.Rout.save
tests/ktnb.Rout.save
tests/chk.R
tests/famnegbin.R
tests/penmlogl.R
tests/famtnb.Rout.save
tests/foobar.R
tests/reaster.Rout.save
tests/ktnb.rda
tests/famber.Rout.save
tests/reaster1.rda
tests/raster.Rout.save
tests/newfam.Rout.save
tests/trans.R
tests/reaster-warn.Rout.save
tests/formula.Rout.save
tests/gradmat.Rout.save
tests/nzp.Rout.save
tests/newpickle.R
tests/famnorloc.R
tests/famnegbin.Rout.save
tests/mlogl-unco.Rout.save
tests/gradmat.rda
src
src/Makevars
src/astchk.c
src/asttrans9.c
src/astderiv.c
src/astfam.c
src/mlogl.c
src/astsim.c
src/asttrans6.c
src/asttrans7.c
src/mlogl.h
src/raster.c
src/astderiv4.c
src/rraster.h
src/aster.h
src/raster.h
src/validtrips.c
src/astderiv3.c
src/asttrans5.c
src/asttrans2.c
src/astcond.c
src/matops.c
src/astorig.c
src/init.c
src/astderiv2.c
src/vatops.c
src/astfish.c
src/astunco.c
src/asttrans8.c
src/asttrans.c
NAMESPACE
data
data/echinacea.txt.gz
data/oats.rda
data/echin2.rda
data/radish.rda
data/sim.rda
data/chamae.rda
data/chamae2.rda
data/chamae3.rda
data/aphid.rda
R
R/anova.R
R/mlogl.R
R/rktnb.R
R/aster.R
R/quickle.R
R/is.zero.R
R/pickle3.R
R/reaster.R
R/pickle.R
R/families.R
R/raster.R
R/rktp.R
R/famfun.R
R/penmlogl.R
R/predict.aster.R
R/transform.R
R/newpickle.R
vignettes
vignettes/re.Rnw
vignettes/trunc.Rnw
vignettes/tutor.Rnw
vignettes/linkingTo.Rnw
MD5
build
build/vignette.rds
DESCRIPTION
man
man/transform.Rd
man/aphid.Rd
man/anova.asterOrReaster.Rd
man/truncated.Rd
man/families.Rd
man/chamae3.Rd
man/radish.Rd
man/summary.reaster.Rd
man/echin2.Rd
man/quickle.Rd
man/oats.Rd
man/penmlogl.Rd
man/echinacea.Rd
man/chamae.Rd
man/chamae2.Rd
man/mlogl.Rd
man/pickle.Rd
man/newpickle.Rd
man/raster.Rd
man/summary.aster.Rd
man/reaster.Rd
man/predict.aster.Rd
man/aster.Rd
man/sim.Rd
.Rinstignore
LICENSE
CHANGES
aster documentation built on May 19, 2017, 8:55 p.m.