asymLD: Asymmetric Linkage Disequilibrium (ALD) for Polymorphic Genetic Data
Version 0.1

Computes asymmetric LD measures (ALD) for multi-allelic genetic data. These measures are identical to the correlation measure (r) for bi-allelic data.

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AuthorRichard M. Single
Date of publication2016-01-30 19:00:02
MaintainerRichard M. Single <rsingle@uvm.edu>
LicenseGPL-2
Version0.1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("asymLD")

Man pages

asymLD-package: asymLD: a package for computing asymmetric Linkage...
compute.ALD: Compute ALD.
compute.AShomz: Compute allele specific homozygosity.
hla.freqs: Pairwise haplotype frequencies for 7 HLA loci
lsort: Sort a data.frame.
snp.freqs: Pairwise haplotype frequencies for 4 SNP loci

Functions

asymLD Man page
asymLD-package Man page
compute.ALD Man page Source code
compute.AShomz Man page Source code
hla.freqs Man page
lsort Man page Source code
snp.freqs Man page

Files

inst
inst/examples
inst/examples/examples.R
inst/CITATION
NAMESPACE
data
data/hla.freqs.rda
data/snp.freqs.rda
R
R/compute.ALD.R
R/compute.AShomz.R
R/data_documentation.R
R/package_documentation.R
R/lsort.R
README.md
MD5
DESCRIPTION
man
man/lsort.Rd
man/asymLD-package.Rd
man/snp.freqs.Rd
man/hla.freqs.Rd
man/compute.ALD.Rd
man/compute.AShomz.Rd
asymLD documentation built on May 19, 2017, 6:08 p.m.