asymLD: Asymmetric Linkage Disequilibrium (ALD) for Polymorphic Genetic Data

Computes asymmetric LD measures (ALD) for multi-allelic genetic data. These measures are identical to the correlation measure (r) for bi-allelic data.

Author
Richard M. Single
Date of publication
2016-01-30 19:00:02
Maintainer
Richard M. Single <rsingle@uvm.edu>
License
GPL-2
Version
0.1

View on CRAN

Man pages

asymLD-package
asymLD: a package for computing asymmetric Linkage...
compute.ALD
Compute ALD.
compute.AShomz
Compute allele specific homozygosity.
hla.freqs
Pairwise haplotype frequencies for 7 HLA loci
lsort
Sort a data.frame.
snp.freqs
Pairwise haplotype frequencies for 4 SNP loci

Files in this package

asymLD
asymLD/inst
asymLD/inst/examples
asymLD/inst/examples/examples.R
asymLD/inst/CITATION
asymLD/NAMESPACE
asymLD/data
asymLD/data/hla.freqs.rda
asymLD/data/snp.freqs.rda
asymLD/R
asymLD/R/compute.ALD.R
asymLD/R/compute.AShomz.R
asymLD/R/data_documentation.R
asymLD/R/package_documentation.R
asymLD/R/lsort.R
asymLD/README.md
asymLD/MD5
asymLD/DESCRIPTION
asymLD/man
asymLD/man/lsort.Rd
asymLD/man/asymLD-package.Rd
asymLD/man/snp.freqs.Rd
asymLD/man/hla.freqs.Rd
asymLD/man/compute.ALD.Rd
asymLD/man/compute.AShomz.Rd