aucm: AUC Maximization
Version 2017.3-2

Implements methods for identifying linear and nonlinear marker combinations that maximizes the Area Under the AUC Curve (AUC).

Browse man pages Browse package API and functions Browse package files

AuthorYouyi Fong <youyifong@gmail.com>, Krisztian Sebestyen <ksebestyen@gmail.com>, Shuxin Yin <yinshuxin05@gmail.com>, Ying Huang <yhuang124@gmail.com>
Date of publication2017-03-03 01:05:47
MaintainerYouyi Fong <youyifong@gmail.com>
LicenseGPL-2
Version2017.3-2
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("aucm")

Man pages

auc: AUC
auc.dca: AUC optimization with DCA
aucm: aucm
bupa: Bupa Dataset
cleveland: Cleveland Dataset
control.minQuad: control.minQuad
getQ: getQ
get.X.diff: get.X.diff
grid.auc: grid.auc
kyphosis: Kyphosis Data
minQuad: minQuad
ramp.f: ramp.f
rauc: rauc
rlogit: rlogit
roc: ROC and AUC
sample.for.cv: sample.for.cv
sauc.phi: sauc.phi
simulations: Simulate datasets
tune.it: tune.it

Functions

Free_minQuad Source code
Free_minQuad_2 Source code
GBY3Fs Source code
GBY3Fsm Source code
S1 Source code
S1.dd Source code
S1.deriv Source code
S2 Source code
S2.deriv Source code
S3 Source code
S3.deriv Source code
S4 Source code
S4.dd Source code
S4.deriv Source code
addRoc Man page Source code
auc Man page
auc.dca Man page Source code
auc_aem Source code
auc_em Source code
aucm Man page
bupa Man page
cal Source code
cal.SGD Source code
calAUC Source code
calAnchor Source code
calAnchor.SGD Source code
calXdiff Source code
classification.error Man page Source code
cleveland Man page
coef.auc Man page Source code
coef.rlogit Man page Source code
computeRoc Man page Source code
control.minQuad Man page Source code
d2auc_aem Source code
dauc_aem Source code
dcsauc Man page Source code
dcsauc.f Man page Source code
der2phiBY3 Source code
derphiBY3 Source code
derpsiBY3 Source code
eauc Man page Source code
fast.auc Man page Source code
get.X.diff Man page Source code
get.X.diff.default Man page Source code
get.X.diff.formula Man page Source code
get.gamma0 Man page Source code
get.vcov.sauc Source code
getQ Man page Man page Source code
grid.auc Man page Source code
h1 Source code
h2 Source code
h2.deriv Source code
kyphosis Man page
logistic.f Man page Source code
loqo Source code
minQuad Man page Man page Source code
normanc Source code
normsq Source code
nsv Man page Source code
nsv.rauc Man page Source code
phi.f Man page Source code
phiBY3 Source code
plot.gridsearch Man page Source code
plot.rauc Man page Source code
plotRoc Man page Source code
predict.auc Man page Source code
predict.rlogit Man page Source code
print.auc Man page Source code
print.minQuad Man page Source code Source code
psiBY3 Source code
ramp.f Man page Man page Source code Source code
ratio Man page Source code
ratio.auc Man page Source code
ratio.glm Man page Source code
ratio.rlogit Man page
rauc Man page Source code
rauc.dca.approx Source code
rauc.dca.approx.gr Source code
rhoBY3 Source code
rlogit Man page Source code
s_der_1_w Source code
s_der_2_w Source code
sample.for.cv Man page Man page Source code
sauc.approx.dca Source code
sauc.approx.dca.gr Source code
sauc.approx.dca.hess Source code
sauc.phi Man page Source code
sigmaBY3 Source code
sim.MH1 Man page Source code
sim.MH11 Man page Source code
sim.MH2 Man page Source code
sim.NL Man page Source code
sim.NL1 Man page
sim.YH1 Man page Source code
sim.YH2 Man page Source code
sim.d20c Man page Source code
sim.dat.1 Man page Source code
sim.disc Man page Source code
sim.easy Man page Source code
sim.mix Man page Source code
sim.p1 Man page Source code
sim.pauc.old1 Source code
sim.pepe.2 Man page Source code
sim.ring Man page Source code
simulations Man page
skin.orange Man page Source code
smooth.rauc Man page Source code
srauc Man page
sterby3 Source code
summary.auc Man page Source code
trainauc Man page Source code
trainauc.auc Man page Source code
trainauc.glm Man page Source code
trainauc.rlogit Man page Source code
try.error Source code
tune.it Man page Source code
vcov.gridsearch Man page Source code
vcov.rauc Man page Source code
vcov.sauc Man page Source code

Files

inst
inst/additionalTests
inst/additionalTests/auc.R
inst/unitTests
inst/unitTests/runRUnitTests.R
inst/unitTests/Makefile
inst/unitTests/runit.misc.R
inst/unitTests/report.txt
inst/unitTests/runit.srauc.R
inst/unitTests/runit.rauc.R
tests
tests/doRUnit.R
src
src/matrix.c
src/Makevars
src/working_set.h
src/dbreakpt.c
src/solveQuad.c
src/dtron.c
src/dgpnrm.c
src/dtrpcg.c
src/working_set.c
src/misc.c
src/loqo.h
src/dcauchy.c
src/dspcg.c
src/dtrqsol.c
src/minQuad_QP.c
src/minQuad.c
src/dcsauc_decomp.c
src/random.h
src/random.c
src/dprsrch.c
src/dcsauc_tron.c
src/sort.c
src/dprecond.c
src/minQuad_QP.h
src/srauc_tron_decomp.c
src/minQuad_2.c
src/registerDynamicSymbol.c
src/loqo.c
src/sort.h
src/minQuad.h
src/qp_exhaustive.c
src/qp_exhaustive.h
src/C_dgesv.c
src/Makevars.win
src/dgpstep.c
src/qp_solvers.c
src/matrix.h
NAMESPACE
data
data/bupa.rda
data/kyphosis.rda
data/cleveland.rda
R
R/tuning.R
R/grid.auc.R
R/loqo.R
R/dc_auc.R
R/rlogit.r
R/minQuad.R
R/rauc.R
R/eauc.R
R/sauc.R
R/simulations.R
R/get_K_Q.R
R/roc.R
R/auc.R
MD5
DESCRIPTION
ChangeLog
man
man/kyphosis.Rd
man/auc.dca.Rd
man/getQ.Rd
man/ramp.f.Rd
man/tune.it.Rd
man/aucm.Rd
man/control.minQuad.Rd
man/simulations.Rd
man/rauc.Rd
man/auc.Rd
man/sauc.phi.Rd
man/minQuad.Rd
man/get.X.diff.Rd
man/roc.Rd
man/grid.auc.Rd
man/cleveland.Rd
man/bupa.Rd
man/sample.for.cv.Rd
man/rlogit.Rd
aucm documentation built on May 20, 2017, 1:01 a.m.