get_genome_id_of_wild_type_organisms: Get genomes of wild-type organisms

In avidaR: A Computational Biologist’s Toolkit To Get Data From 'avidaDB'

Get genomes of wild-type organisms

Description

Get the genome of the digital organisms that were used as wild-type organisms to get their single-point mutants by calling the function get_mutant_at_pos.

Usage

get_genome_id_of_wild_type_organisms(triplestore)

Arguments

triplestore

Object of class triplestore_access which manages database access.

Value

Data frame: "genome_id_wild_type".

Examples

# Create triplestore object
avidaDB <- triplestore_access$new()

# Set access options
avidaDB$set_access_options(
  url = "https://graphdb.fortunalab.org",
  user = "public_avida",
  password = "public_avida",
  repository = "avidaDB_test"
)

get_genome_id_of_wild_type_organisms(triplestore = avidaDB)

avidaR documentation built on June 22, 2024, 9:21 a.m.