bPeaks is a simple approach to identify transcription factor binding sites from ChIP-seq data. Our general philosophy is to provide an easy-to-use tool, well-adapted for small eukaryotic genomes (< 20 Mb). bPeaks uses a combination of 4 cutoffs (T1, T2, T3 and T4) to mimic "good peak" properties as described by biologists who visually inspect the ChIP-seq data on a genome browser. For yeast genomes, bPeaks calculates the proportion of peaks that fall in promoter sequences. These peaks are good candidates as transcription factor binding sites.
|Author||Jawad MERHEJ and Gaelle LELANDAIS|
|Date of publication||2014-02-28 17:55:13|
|Maintainer||Gaelle LELANDAIS <[email protected]>|
|Package repository||View on CRAN|
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