bPeaks is a simple approach to identify transcription factor binding sites from ChIP-seq data. Our general philosophy is to provide an easy-to-use tool, well-adapted for small eukaryotic genomes (< 20 Mb). bPeaks uses a combination of 4 cutoffs (T1, T2, T3 and T4) to mimic "good peak" properties as described by biologists who visually inspect the ChIP-seq data on a genome browser. For yeast genomes, bPeaks calculates the proportion of peaks that fall in promoter sequences. These peaks are good candidates as transcription factor binding sites.
Package details |
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Author | Jawad MERHEJ and Gaelle LELANDAIS |
Maintainer | Gaelle LELANDAIS <gaelle.lelandais@univ-paris-diderot.fr> |
License | GPL |
Version | 1.2 |
Package repository | View on CRAN |
Installation |
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