babar: Bayesian Bacterial Growth Curve Analysis in R

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Babar is designed to use nested sampling (a Bayesian analysis technique) to compare possible models for bacterial growth curves, as well as extracting parameters. It allows model evidence and parameter likelihood values to be extracted, and also contains helper functions for comparing distributions as well as direct access to the underlying nested sampling code.

Author
Lydia Rickett, Matthew Hartley, Richard Morris and Nick Pullen
Date of publication
2015-02-24 23:27:07
Maintainer
Matthew Hartley <Matthew.Hartley@jic.ac.uk>
License
GPL-2
Version
1.0

View on CRAN

Man pages

babar-package
Bayesian Bacterial Growth Curve Analysis in R
Bayescompare
Bayescompare
Bayesfit
Bayesfit
CauchyPrior
CauchyPrior
compareDistributions
compareDistributions
ExponentialPrior
ExponentialPrior
GaussianPrior
GaussianPrior
getEqualSamples
getEqualSamples
JeffreysPrior
JeffreysPrior
LogNormalPrior
LogNormalPrior
nestedSampling
nestedSampling
UniformPrior
UniformPrior
WeibullPrior
WeibullPrior

Files in this package

babar
babar/inst
babar/inst/extdata
babar/inst/extdata/LmH_411.csv
babar/inst/extdata/B119_5.csv
babar/inst/extdata/B092_1.csv
babar/inst/extdata/B174_Ah.csv
babar/inst/extdata/Tas1387.csv
babar/inst/extdata/M126_50.csv
babar/inst/doc
babar/inst/doc/worksheet2.pdf.asis
babar/inst/doc/comparing_distributions.Rmd
babar/inst/doc/worksheet1.pdf
babar/inst/doc/comparing_distributions.R
babar/inst/doc/worksheet1.pdf.asis
babar/inst/doc/comparing_distributions.html
babar/inst/doc/worksheet2.pdf
babar/NAMESPACE
babar/R
babar/R/compareDists.R
babar/R/nested.R
babar/R/Bayesdouble.R
babar/R/params2priors.R
babar/R/Bayessingle.R
babar/vignettes
babar/vignettes/worksheet2.pdf.asis
babar/vignettes/comparing_distributions.Rmd
babar/vignettes/worksheet1.pdf.asis
babar/MD5
babar/build
babar/build/vignette.rds
babar/DESCRIPTION
babar/man
babar/man/ExponentialPrior.Rd
babar/man/getEqualSamples.Rd
babar/man/LogNormalPrior.Rd
babar/man/babar-package.Rd
babar/man/compareDistributions.Rd
babar/man/UniformPrior.Rd
babar/man/Bayescompare.Rd
babar/man/Bayesfit.Rd
babar/man/nestedSampling.Rd
babar/man/WeibullPrior.Rd
babar/man/GaussianPrior.Rd
babar/man/CauchyPrior.Rd
babar/man/JeffreysPrior.Rd