babar: Bayesian Bacterial Growth Curve Analysis in R
Version 1.0

Babar is designed to use nested sampling (a Bayesian analysis technique) to compare possible models for bacterial growth curves, as well as extracting parameters. It allows model evidence and parameter likelihood values to be extracted, and also contains helper functions for comparing distributions as well as direct access to the underlying nested sampling code.

AuthorLydia Rickett, Matthew Hartley, Richard Morris and Nick Pullen
Date of publication2015-02-24 23:27:07
MaintainerMatthew Hartley <Matthew.Hartley@jic.ac.uk>
LicenseGPL-2
Version1.0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("babar")

Getting started

Package overview

Popular man pages

babar-package: Bayesian Bacterial Growth Curve Analysis in R
ExponentialPrior: ExponentialPrior
GaussianPrior: GaussianPrior
JeffreysPrior: JeffreysPrior
LogNormalPrior: LogNormalPrior
nestedSampling: nestedSampling
WeibullPrior: WeibullPrior
See all...

All man pages Function index File listing

Man pages

babar-package: Bayesian Bacterial Growth Curve Analysis in R
Bayescompare: Bayescompare
Bayesfit: Bayesfit
CauchyPrior: CauchyPrior
compareDistributions: compareDistributions
ExponentialPrior: ExponentialPrior
GaussianPrior: GaussianPrior
getEqualSamples: getEqualSamples
JeffreysPrior: JeffreysPrior
LogNormalPrior: LogNormalPrior
nestedSampling: nestedSampling
UniformPrior: UniformPrior
WeibullPrior: WeibullPrior

Functions

Bar3par Source code Source code
Bar4par Source code Source code
Bar6par Source code
Bayescompare Man page
Bayesfit Man page
CauchyPrior Man page
ExponentialPrior Man page
GaussianPrior Man page
JeffreysPrior Man page
LogNormalPrior Man page
UniformPrior Man page
WeibullPrior Man page
babar Man page
babar-package Man page
ballMcmcStep Source code
compareDistributions Man page
explore Source code
generatePriorSamples Source code
generateTransform Source code
generateTransformDouble Source code
generateTransformSingle Source code
generateUnitHyperCube Source code
getEqualSamples Man page
linear Source code Source code
llfMaker Source code
logPlus Source code
logistic Source code Source code
logllDouble Source code
logllSingle Source code
makeBoundedSingleStep Source code
makeBoundedStep Source code
makeMcmcStep Source code
makeStep Source code
nestedSampling Man page
sortdata Source code Source code
staircaseSampling Source code

Files

inst
inst/extdata
inst/extdata/LmH_411.csv
inst/extdata/B119_5.csv
inst/extdata/B092_1.csv
inst/extdata/B174_Ah.csv
inst/extdata/Tas1387.csv
inst/extdata/M126_50.csv
inst/doc
inst/doc/worksheet2.pdf.asis
inst/doc/comparing_distributions.Rmd
inst/doc/worksheet1.pdf
inst/doc/comparing_distributions.R
inst/doc/worksheet1.pdf.asis
inst/doc/comparing_distributions.html
inst/doc/worksheet2.pdf
NAMESPACE
R
R/compareDists.R
R/nested.R
R/Bayesdouble.R
R/params2priors.R
R/Bayessingle.R
vignettes
vignettes/worksheet2.pdf.asis
vignettes/comparing_distributions.Rmd
vignettes/worksheet1.pdf.asis
MD5
build
build/vignette.rds
DESCRIPTION
man
man/ExponentialPrior.Rd
man/getEqualSamples.Rd
man/LogNormalPrior.Rd
man/babar-package.Rd
man/compareDistributions.Rd
man/UniformPrior.Rd
man/Bayescompare.Rd
man/Bayesfit.Rd
man/nestedSampling.Rd
man/WeibullPrior.Rd
man/GaussianPrior.Rd
man/CauchyPrior.Rd
man/JeffreysPrior.Rd
babar documentation built on May 19, 2017, 10:58 a.m.