babar: Bayesian Bacterial Growth Curve Analysis in R

Babar is designed to use nested sampling (a Bayesian analysis technique) to compare possible models for bacterial growth curves, as well as extracting parameters. It allows model evidence and parameter likelihood values to be extracted, and also contains helper functions for comparing distributions as well as direct access to the underlying nested sampling code.

AuthorLydia Rickett, Matthew Hartley, Richard Morris and Nick Pullen
Date of publication2015-02-24 23:27:07
MaintainerMatthew Hartley <Matthew.Hartley@jic.ac.uk>
LicenseGPL-2
Version1.0

View on CRAN

Files

babar
babar/inst
babar/inst/extdata
babar/inst/extdata/LmH_411.csv
babar/inst/extdata/B119_5.csv
babar/inst/extdata/B092_1.csv
babar/inst/extdata/B174_Ah.csv
babar/inst/extdata/Tas1387.csv
babar/inst/extdata/M126_50.csv
babar/inst/doc
babar/inst/doc/worksheet2.pdf.asis
babar/inst/doc/comparing_distributions.Rmd
babar/inst/doc/worksheet1.pdf
babar/inst/doc/comparing_distributions.R
babar/inst/doc/worksheet1.pdf.asis
babar/inst/doc/comparing_distributions.html
babar/inst/doc/worksheet2.pdf
babar/NAMESPACE
babar/R
babar/R/compareDists.R babar/R/nested.R babar/R/Bayesdouble.R babar/R/params2priors.R babar/R/Bayessingle.R
babar/vignettes
babar/vignettes/worksheet2.pdf.asis
babar/vignettes/comparing_distributions.Rmd
babar/vignettes/worksheet1.pdf.asis
babar/MD5
babar/build
babar/build/vignette.rds
babar/DESCRIPTION
babar/man
babar/man/ExponentialPrior.Rd babar/man/getEqualSamples.Rd babar/man/LogNormalPrior.Rd babar/man/babar-package.Rd babar/man/compareDistributions.Rd babar/man/UniformPrior.Rd babar/man/Bayescompare.Rd babar/man/Bayesfit.Rd babar/man/nestedSampling.Rd babar/man/WeibullPrior.Rd babar/man/GaussianPrior.Rd babar/man/CauchyPrior.Rd babar/man/JeffreysPrior.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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All documentation is copyright its authors; we didn't write any of that.