NEWS.md

In babelwhale: Talking to 'Docker' and 'Singularity' Containers

babelwhale 1.2.0

• BUG FIX test_singularity_installation(): No longer fails when Apptainer is used instead of Singularity.

• MINOR CHANGES run(): Use different environment variables when Singularity is actually Apptainer.

• NEW FUNCTIONALITY run_auto_mount(): Added helper function for letting babelwhale figure out which directories to mount automatically (#26, thanks @joelnitta!).

babelwhale 1.0.3

• BUG FIX detect_backend(): Print helpful message when neither docker or singularity are installed (Thanks @KforKuma).

babelwhale 1.0.2

• BUG FIX test_docker_installation(): Use docker info to check whether docker is available.

• BUG FIX: Redirect stdout and stderr to files to avoid processx hangs (#24, thanks @joelnitta!).

• MINOR CHANGE: Change maintainer from Wouter to Robrecht.

• MINOR CHANGE: Added an environment_variables to the singularity and docker config.

babelwhale 1.0.1 (03-10-2019)

• BUG FIX set_config_default(): Fixed refactoring error; use saveRDS instead of save.

babelwhale 1.0.0 (28-06-2019)

• Release of babelwhale, a package to run docker and singularity containers from R.

babelwhale documentation built on July 26, 2023, 5:24 p.m.