Files in babette
Control 'BEAST2'
MD5
NAMESPACE
DESCRIPTION
R/check_beast2_pkgs.R
R/bbt_run.R
R/parse_beast2_output_to_ns.R
R/import-standalone-types-check.R
R/bbt_delete_temp_files.R
R/create_test_ns_output.R
R/prepare_file_creation.R
R/update_babette.R
R/import-standalone-obj-type.R
R/babette-package.R
R/default_params_doc.R
R/bbt_run_from_model.R
R/bbt_self_test.R
R/check_true_false.R
R/get_babette_path.R
R/get_babette_paths.R
R/plot_densitree.R
R/parse_beast2_output.R
R/bbt_continue.R
R/get_alignment_ids_from_xml.R
R/create_test_bbt_run_output.R
inst/CITATION
inst/WORDLIST
inst/doc/examples.Rmd
inst/doc/demo.Rmd
inst/doc/nested_sampling.R
inst/doc/examples.html
inst/doc/nested_sampling.html
inst/doc/tutorial.R
inst/doc/tutorial.Rmd
inst/doc/nested_sampling.Rmd
inst/doc/demo.R
inst/doc/demo.html
inst/doc/step_by_step.Rmd
inst/doc/examples.R
inst/doc/step_by_step.R
inst/doc/step_by_step.html
inst/doc/tutorial.html
inst/extdata/anthus_aco_sub.fas
inst/extdata/anthus_aco_sub.posterior.trees
inst/extdata/beautier_issue_135.xml
inst/extdata/Felinecoronavirus_Envelope_1.txt
inst/extdata/2_4.xml
inst/extdata/Felinecoronavirus_Envelope_1.trees
inst/extdata/anthus_nd2_sub.fas
inst/extdata/Felinecoronavirus_Envelope_1.fas
inst/extdata/Felinecoronavirus_Envelope_1_no_quotes.txt
inst/extdata/nested_sampling.xml
inst/extdata/anthus_nd2.fas
inst/extdata/anthus_aco_sub.posterior.log
inst/extdata/anthus_aco.fas
inst/extdata/anthus_2_4.xml
build/vignette.rds
vignettes/examples.Rmd
vignettes/aco_hky_nd2_tn93.png
vignettes/jc69_2_4.png
vignettes/demo.Rmd
vignettes/mrca_crown_age.png
vignettes/strict_clock_rate_0_5_2_4.png
vignettes/tutorial.Rmd
vignettes/rln_2_4.png
vignettes/all_default.png
vignettes/nested_sampling.Rmd
vignettes/anthus_2_4.png
vignettes/hky_prop_invariant_0_5_2_4.png
vignettes/step_by_step.Rmd
vignettes/babette_logo.png
vignettes/bd_2_4.png
vignettes/birth_rate_normal_2_4.png
vignettes/examples_cache/html/example_8_90787f23d58f0de0599b411ed20e7c20.RData
vignettes/examples_cache/html/example_3_11fbfa43944bbc2e310efe598a505c35.rdb
vignettes/examples_cache/html/example_4_521ce55b7ae5f6ff8ac75cc5312bac80.rdb
vignettes/examples_cache/html/example_1_aae42ad344a56abfbba9f9bb0ff4cf37.rdx
vignettes/examples_cache/html/example_3_11fbfa43944bbc2e310efe598a505c35.rdx
vignettes/examples_cache/html/example_4_521ce55b7ae5f6ff8ac75cc5312bac80.RData
vignettes/examples_cache/html/example_5_fc83f5faaa6490080f065ddabb8190d0.RData
vignettes/examples_cache/html/example_6_b62d3ee855992655c324c0de2c921a98.rdx
vignettes/examples_cache/html/example_3_11fbfa43944bbc2e310efe598a505c35.RData
vignettes/examples_cache/html/example_5_fc83f5faaa6490080f065ddabb8190d0.rdb
vignettes/examples_cache/html/example_8_90787f23d58f0de0599b411ed20e7c20.rdb
vignettes/examples_cache/html/__packages
vignettes/examples_cache/html/example_7_645f6ef41c86b4c983873f3bafa5147b.rdx
vignettes/examples_cache/html/example_8_90787f23d58f0de0599b411ed20e7c20.rdx
vignettes/examples_cache/html/example_1_aae42ad344a56abfbba9f9bb0ff4cf37.rdb
vignettes/examples_cache/html/example_7_645f6ef41c86b4c983873f3bafa5147b.rdb
vignettes/examples_cache/html/example_6_b62d3ee855992655c324c0de2c921a98.RData
vignettes/examples_cache/html/example_7_645f6ef41c86b4c983873f3bafa5147b.RData
vignettes/examples_cache/html/example_6_b62d3ee855992655c324c0de2c921a98.rdb
vignettes/examples_cache/html/example_1_aae42ad344a56abfbba9f9bb0ff4cf37.RData
vignettes/examples_cache/html/example_4_521ce55b7ae5f6ff8ac75cc5312bac80.rdx
vignettes/examples_cache/html/example_5_fc83f5faaa6490080f065ddabb8190d0.rdx
vignettes/tutorial_cache/html/unnamed-chunk-10_697265e2da488c166ed2ce5bfee852ee.rdx
vignettes/tutorial_cache/html/unnamed-chunk-6_0785a694142115e8d5edd2f35c63c114.rdx
vignettes/tutorial_cache/html/unnamed-chunk-6_0785a694142115e8d5edd2f35c63c114.rdb
vignettes/tutorial_cache/html/unnamed-chunk-6_0785a694142115e8d5edd2f35c63c114.RData
vignettes/tutorial_cache/html/unnamed-chunk-4_2e064d7565dc054dcacce271ed0decd4.RData
vignettes/tutorial_cache/html/unnamed-chunk-10_697265e2da488c166ed2ce5bfee852ee.rdb
vignettes/tutorial_cache/html/unnamed-chunk-15_926cabe6f4ef0aad2c73549d94724ded.rdb
vignettes/tutorial_cache/html/__packages
vignettes/tutorial_cache/html/unnamed-chunk-15_926cabe6f4ef0aad2c73549d94724ded.rdx
vignettes/tutorial_cache/html/unnamed-chunk-8_6a717f8f1889f3a79ee453a4e7feaa8b.rdx
vignettes/tutorial_cache/html/unnamed-chunk-8_6a717f8f1889f3a79ee453a4e7feaa8b.rdb
vignettes/tutorial_cache/html/unnamed-chunk-4_2e064d7565dc054dcacce271ed0decd4.rdx
vignettes/tutorial_cache/html/unnamed-chunk-4_2e064d7565dc054dcacce271ed0decd4.rdb
vignettes/tutorial_cache/html/unnamed-chunk-10_697265e2da488c166ed2ce5bfee852ee.RData
vignettes/tutorial_cache/html/unnamed-chunk-8_6a717f8f1889f3a79ee453a4e7feaa8b.RData
vignettes/tutorial_cache/html/unnamed-chunk-15_926cabe6f4ef0aad2c73549d94724ded.RData
vignettes/examples_files/figure-html/unnamed-chunk-8-1.png
vignettes/examples_files/figure-html/unnamed-chunk-6-1.png
vignettes/examples_files/figure-html/unnamed-chunk-11-1.png
vignettes/examples_files/figure-html/unnamed-chunk-12-1.png
vignettes/examples_files/figure-html/unnamed-chunk-4-1.png
vignettes/examples_files/figure-html/unnamed-chunk-9-1.png
vignettes/examples_files/figure-html/unnamed-chunk-7-1.png
vignettes/examples_files/figure-html/unnamed-chunk-10-1.png
man/bbt_run.Rd
man/babette-package.Rd
man/get_babette_paths.Rd
man/get_alignment_ids_from_xml.Rd
man/check_beast2_pkgs.Rd
man/get_babette_path.Rd
man/create_test_bbt_run_output.Rd
man/plot_densitree.Rd
man/parse_beast2_output_to_ns.Rd
man/bbt_delete_temp_files.Rd
man/default_params_doc.Rd
man/parse_beast2_output.Rd
man/prepare_file_creation.Rd
man/bbt_self_test.Rd
man/bbt_run_from_model.Rd
man/update_babette.Rd
man/create_test_ns_output.Rd
man/bbt_continue.Rd
man/figures/swan_mono_background_2.png
man/figures/GitHubActions.png
man/figures/AppVeyor.png
man/figures/r_logo.png
man/figures/swan_mono_background.png
man/figures/babette_logo.png
man/figures/example_ess.png
man/figures/swan.png
man/figures/example_birth_rate.png
man/figures/Codecov.png
