Files in babette
Control 'BEAST2'
MD5
NAMESPACE
DESCRIPTION
R/check_beast2_pkgs.R
R/bbt_run.R
R/parse_beast2_output_to_ns.R
R/bbt_delete_temp_files.R
R/create_test_ns_output.R
R/prepare_file_creation.R
R/update_babette.R
R/babette-package.R
R/default_params_doc.R
R/bbt_run_from_model.R
R/bbt_self_test.R
R/get_babette_path.R
R/get_babette_paths.R
R/plot_densitree.R
R/parse_beast2_output.R
R/bbt_continue.R
R/get_alignment_ids_from_xml.R
R/create_test_bbt_run_output.R
inst/CITATION
inst/WORDLIST
inst/doc/examples.Rmd
inst/doc/demo.Rmd
inst/doc/nested_sampling.R
inst/doc/examples.html
inst/doc/nested_sampling.html
inst/doc/tutorial.R
inst/doc/tutorial.Rmd
inst/doc/nested_sampling.Rmd
inst/doc/demo.R
inst/doc/demo.html
inst/doc/step_by_step.Rmd
inst/doc/examples.R
inst/doc/step_by_step.R
inst/doc/step_by_step.html
inst/doc/tutorial.html
inst/extdata/anthus_aco_sub.fas
inst/extdata/anthus_aco_sub.posterior.trees
inst/extdata/beautier_issue_135.xml
inst/extdata/Felinecoronavirus_Envelope_1.txt
inst/extdata/2_4.xml
inst/extdata/Felinecoronavirus_Envelope_1.trees
inst/extdata/anthus_nd2_sub.fas
inst/extdata/Felinecoronavirus_Envelope_1.fas
inst/extdata/Felinecoronavirus_Envelope_1_no_quotes.txt
inst/extdata/nested_sampling.xml
inst/extdata/anthus_nd2.fas
inst/extdata/anthus_aco_sub.posterior.log
inst/extdata/anthus_aco.fas
inst/extdata/anthus_2_4.xml
build/vignette.rds
vignettes/examples.Rmd
vignettes/aco_hky_nd2_tn93.png
vignettes/jc69_2_4.png
vignettes/demo.Rmd
vignettes/mrca_crown_age.png
vignettes/strict_clock_rate_0_5_2_4.png
vignettes/tutorial.Rmd
vignettes/rln_2_4.png
vignettes/all_default.png
vignettes/nested_sampling.Rmd
vignettes/anthus_2_4.png
vignettes/hky_prop_invariant_0_5_2_4.png
vignettes/step_by_step.Rmd
vignettes/babette_logo.png
vignettes/bd_2_4.png
vignettes/birth_rate_normal_2_4.png
vignettes/examples_cache/html/example_8_653b632e0bbf67dd184bed6c2bd19058.RData
vignettes/examples_cache/html/example_1_8ccc8d630abcff9ba112a2689b83fa3a.rdx
vignettes/examples_cache/html/example_6_75969a91a41d86c0cf8b44d4d1765f31.rdx
vignettes/examples_cache/html/example_4_8d5247ff206ced45bf43335b1cbc76e1.rdb
vignettes/examples_cache/html/example_6_75969a91a41d86c0cf8b44d4d1765f31.rdb
vignettes/examples_cache/html/example_5_b8fdcc46b1a6395dba1ca431117f6a38.rdb
vignettes/examples_cache/html/example_7_e1c166eb1db7ff0668822c8423088bd5.rdx
vignettes/examples_cache/html/example_6_75969a91a41d86c0cf8b44d4d1765f31.RData
vignettes/examples_cache/html/example_4_8d5247ff206ced45bf43335b1cbc76e1.rdx
vignettes/examples_cache/html/example_1_8ccc8d630abcff9ba112a2689b83fa3a.rdb
vignettes/examples_cache/html/example_7_e1c166eb1db7ff0668822c8423088bd5.RData
vignettes/examples_cache/html/example_1_8ccc8d630abcff9ba112a2689b83fa3a.RData
vignettes/examples_cache/html/example_5_b8fdcc46b1a6395dba1ca431117f6a38.rdx
vignettes/examples_cache/html/example_4_8d5247ff206ced45bf43335b1cbc76e1.RData
vignettes/examples_cache/html/__packages
vignettes/examples_cache/html/example_8_653b632e0bbf67dd184bed6c2bd19058.rdb
vignettes/examples_cache/html/example_8_653b632e0bbf67dd184bed6c2bd19058.rdx
vignettes/examples_cache/html/example_3_3126eca73ecaa7e1c00ecda575a505f8.rdx
vignettes/examples_cache/html/example_5_b8fdcc46b1a6395dba1ca431117f6a38.RData
vignettes/examples_cache/html/example_3_3126eca73ecaa7e1c00ecda575a505f8.RData
vignettes/examples_cache/html/example_7_e1c166eb1db7ff0668822c8423088bd5.rdb
vignettes/examples_cache/html/example_3_3126eca73ecaa7e1c00ecda575a505f8.rdb
vignettes/tutorial_cache/html/unnamed-chunk-6_2e97450df34cf5ce68e8f79c3572ddb6.rdb
vignettes/tutorial_cache/html/unnamed-chunk-15_bc997c4db86abe8cb39306f1fedb30a6.rdx
vignettes/tutorial_cache/html/unnamed-chunk-10_4c5bdb715b8af8f2eac1017daa4c850b.rdb
vignettes/tutorial_cache/html/unnamed-chunk-10_4c5bdb715b8af8f2eac1017daa4c850b.rdx
vignettes/tutorial_cache/html/__packages
vignettes/tutorial_cache/html/unnamed-chunk-4_9aa03eda11d62e4e64d531cf4ab3b5ab.rdb
vignettes/tutorial_cache/html/unnamed-chunk-15_bc997c4db86abe8cb39306f1fedb30a6.RData
vignettes/tutorial_cache/html/unnamed-chunk-4_9aa03eda11d62e4e64d531cf4ab3b5ab.rdx
vignettes/tutorial_cache/html/unnamed-chunk-8_cf7d5a9f639ba349b647c680a70b633c.RData
vignettes/tutorial_cache/html/unnamed-chunk-8_cf7d5a9f639ba349b647c680a70b633c.rdx
vignettes/tutorial_cache/html/unnamed-chunk-6_2e97450df34cf5ce68e8f79c3572ddb6.rdx
vignettes/tutorial_cache/html/unnamed-chunk-4_9aa03eda11d62e4e64d531cf4ab3b5ab.RData
vignettes/tutorial_cache/html/unnamed-chunk-15_bc997c4db86abe8cb39306f1fedb30a6.rdb
vignettes/tutorial_cache/html/unnamed-chunk-6_2e97450df34cf5ce68e8f79c3572ddb6.RData
vignettes/tutorial_cache/html/unnamed-chunk-10_4c5bdb715b8af8f2eac1017daa4c850b.RData
vignettes/tutorial_cache/html/unnamed-chunk-8_cf7d5a9f639ba349b647c680a70b633c.rdb
vignettes/examples_files/figure-html/unnamed-chunk-8-1.png
vignettes/examples_files/figure-html/unnamed-chunk-6-1.png
vignettes/examples_files/figure-html/unnamed-chunk-11-1.png
vignettes/examples_files/figure-html/unnamed-chunk-12-1.png
vignettes/examples_files/figure-html/unnamed-chunk-4-1.png
vignettes/examples_files/figure-html/unnamed-chunk-9-1.png
vignettes/examples_files/figure-html/unnamed-chunk-7-1.png
vignettes/examples_files/figure-html/unnamed-chunk-10-1.png
man/bbt_run.Rd
man/babette-package.Rd
man/get_babette_paths.Rd
man/get_alignment_ids_from_xml.Rd
man/check_beast2_pkgs.Rd
man/get_babette_path.Rd
man/create_test_bbt_run_output.Rd
man/plot_densitree.Rd
man/parse_beast2_output_to_ns.Rd
man/bbt_delete_temp_files.Rd
man/default_params_doc.Rd
man/parse_beast2_output.Rd
man/prepare_file_creation.Rd
man/bbt_self_test.Rd
man/bbt_run_from_model.Rd
man/update_babette.Rd
man/create_test_ns_output.Rd
man/bbt_continue.Rd
man/figures/swan_mono_background_2.png
man/figures/GitHubActions.png
man/figures/AppVeyor.png
man/figures/r_logo.png
man/figures/swan_mono_background.png
man/figures/babette_logo.png
man/figures/example_ess.png
man/figures/swan.png
man/figures/example_birth_rate.png
man/figures/Codecov.png
