Nothing
NEWS.md
In babsim.hospital: Bartz & Bartz Simulation Hospital
babsim.hospital
11.8.8
- NEW:
- function funBabsimHospital() added (moved from package SPOT)
- updateRkidatafile.R: Formatting improved
11.8.6
- CHANGES
- updateRkidataFile.R updated
- updateIcudataFile
11.8.4
- CHANGES
- Roxygen note: 7.1.2
- Typos in vignette
11.8.2
- CHANGES
- 'rmarkdown' package declared as a dependency (in the suggests field)
11.8.0
- CHANGES
- Minor typos fixed
11.7.26
- NEW:
- UK data analysis added:
- vignette-NumericalMethods
11.7.24
- NEW:
- runoptUK accept new argument
factorUK to adapt the probabilities for
ventilated patients.
11.7.22
- NEW:
- getTrainTestFunction accepts additional argument simRepeats (default=1 for Windows)
11.7.20
- NEW:
- getAndCheckTrainData() function
- checkTrainConfig()
- checkTestData()
- getTestData()
- checkTestConf()
11.7.18
- CHANGES:
- getTrainTestObjFun.R from develop to master.
11.7.16
- CHANGES:
- logLevel <- 0 in getTrainTestObjFun.R
11.7.14
- BUGFIX:
as.Date() provides origin (origin = "1970-01-01") to fix error:
Quitting from lines 618-626 (babsim-vignette-introduction.Rmd)
Error: processing vignette 'babsim-vignette-introduction.Rmd' failed with diagnostics:
'origin' must be supplied:
11.7.12
- BUGFIX:
Found the following (possibly) invalid URLs:
URL: https://www.destatis.de/DE/Themen/Laender-Regionen/Regionales/Gemeindeverzeichnis/_inhalt.html
From: man/GermanCounties.Rd
man/GermanStates.Rd
Status: 400
Message: Bad Request
11.7.10
- CHANGES:
- icudata.R, icudataFull.R, rkidata.R, and rkidataFull.R files added
11.7.24
- NEW:
- runoptUK accept new argument
factorUK to adapt the probabilities for
ventilated patients.
11.7.22
- NEW:
- getTrainTestFunction accepts additional argument simRepeats (default=1 for Windows)
11.7.20
- NEW:
- getAndCheckTrainData() function
- checkTrainConfig()
- checkTestData()
- getTestData()
- checkTestConf()
11.7.18
- Cleanup: code, vignette master
11.7.14
- CHANGES:
- getTrainTestObjFunctions: logLevel <- 0
11.7.12
- NEWS
- Vignette updated
11.7.10
- NEWS
- ukpara added
- vignette for master students
11.7.8
- BUGFIX
- mc.coresN is handled correctly
- babsimHospital example uses conf correctly
11.7.6
- BUGFIX:
- meesagef messageDataRange are exported
11.7.4
- NEW:
- vaccine counts added
11.7.2
- package plotly not suggested anymore
11.7.0
- New data structures
11.6.0
- Improved prediction /conf intervals
11.5.18
- more regions
- envToTibble does not use a default conf argument
11.5.16
- Faster evalutions:
- getDecision() rewritten
- updateP() rewritten
11.5.14
- CRAN comments fixed
11.5.12
- CHANGES:
- Cleanup
- Accelerate testing (region is set to 5374 whenever possible)
11.5.10
- CHANGES:
- babsimrun returns list
11.5.8
- CHANGES:
- importFrom dependencies reduced. The following packages were removed from the
DESCRIPTION Imports list:
- Metrics, simmer.plot, rpart.plot
- examples use smaller data sets
11.5.6
*new para file:
* obkpara with 29 variables (135 obs)
11.5.4
- new para file:
- nrwpara with 29 variables (5 results)
11.5.2
- new para file:
- koelnpara with 29 variables
11.5.0
- WARNING:
runoptDirect() uses x0 <- getStartParameter(region= -1),
because there is no previous region parameter set
- NEW:
- edge: IntensiveAftercare -> Healthy
- UPDATE:
- Probabilities and Durations refined based on feedback from doctors
11.4.6.
* R0 ranges from 0.1
* Error function tests
* Hall of Fame
11.4.4
* CHANGES
* getBounds(): new lower limit (1 instead of 0.5) for Risk Male
11.4.2
* CHANGES:
* funEvalsFactor = 0
11.4.0
* UPDATES:
* config for new local runs (over)
11.3.10
* UPDATES
* local koeln results (maans03)
11.3.8
* UPDATES:
* local obkresults (maans05)
11.3.6
* UPDATES:
* rkidata, icudata 25.11.2020
* local nrwresults (maans04)
11.3.4
* NEWS:
* *over run configurations
11.3.2
- CHANGES:
- koelnpara.R and nrwpara.R use the same run config as obkpara (initial designs, funevals, ..)
- UPDATES:
- rkidata 24.11.2020
11.3.0
- BUGFIX
- getError fixed
11.2.2
- UPDATE:
- new obkpara
11.2.0
- CHANGES:
- New train/test set splittimg procedure
- runoptDirect uses new parameter: tryOnTestSet (default: TRUE)
11.1.16
- UPDATES:
- locally optimized parameter sets koelnpara (tbb)
11.1.14
- UPDATES
- locally optimized parameter sets (tbb)
11.1.12
- UPDATES:
- Cleanup results
11.1.10
- UPDATES:
- rkidata 22.11.2020
- icudata 22.11.2020
11.1.8
- BUGFIX:
- getStartParameter() generates vector, not a list
11.1.6
- CHANGES: Typo fixed
11.1.4
- UPDATES:
- getStartParameter() uses region information (new arg "region")
- nrwpara, nrwarchive fixed
11.1.2
* UPDATES:
* current best parameter setting:
* obkpara.rda, koelnpara.rda, and nrwpara.rda contain the current best
known parameter set
* archived parameter sets:
* results from all runs in obkarchive, koelnarchive, nrwarchive
11.1.0
- CHANGES:
- nrwpara.R
- funevals = 2000 (before: 1000)
- size = 500 (before: 300)
- simrepeats = 5 (before: 10)
11.0.64
- CHANGES:
- Organize results
11.0.62
- NEW:
- results dir added
11.0.60
- NEW:
- First draft of analysis script
11.0.58
- CHANGES:
- *para.R files use "_" instead of "-" as separator
- archive folder
11.0.56
- NEW:
- testing archive
11.0.54
- CHANGES:
- obkpara.R uses 1000 repeats (complete opt. runs)
11.0.52
- CHANGES:
- meta runs uses icuWeights = c(1,1)
11.0.50
- CHANGES: testRepeats = 10
11.0.48:
- UPDATES:
- nrwpara 20.11.20 (17 obs) with y min = 912.14
11.0.46:
- UPDATES:
- koelnpara with icuWeights (1,1) (73 obs) with min y = 12.40
11.0.44
- UPDATES:
- nrwpara 20.11.20 (28 obs) with y min = 912.14
11.0.42:
- UPDATES:
- koelnpara 20.11.20 (100 obs) with min y = 71.14
11.0.40
* CHANGES:
* koelnpara.R uses: icuWeights = c(1,1)
10.0.38:
- UPDATES:
- koelnpara 20.11.20 (100 obs)
11.0.36
* CHANGES:
* obkpara.R uses: icuWeights = c(1,1)
11.0.34
* CHANGES:
* nrwpara.R uses: icuWeights = c(1,1)
11.0.32
* UPDATES:
* koelnpara 20.11.20 (42 obs.)
11.0.28
* UPDATES:
* nrwpara 20.11.20
11.0.26:
- UPDATES:
- koelnpara 20.11.20 (28 obs.)
11.0.24:
- NEWS:
- koelnparameta.R
- obkpara.R
11.0.22:
- CHANGES:
- Slightly increased bounds (constraints)
- Risk male = 1.5 (from 2)
11.0.20
- UPDATES:
- koelnpara (version 11 format, 27 variables, 100 observations)
11.0.18:
- CHANGES:
- Training and testing times modiefied (extended warm-up periods)
- Prob./duration graphs updated
11.0.16
- UPDATES:
- nrwpara (10 observations)
11.0.14
- UPDATES:
- koelnpara (version 11 format, 27 variables, 67 observations)
11.0.12
- UPDATES:
- koelnpara (version 11 format, 27 variables, 47 observations)
11.0.10
- BUGFIX:
- preloadFunctions.R handles parameterfiles with flexible dimensions
11.0.8
- BUGFIX:
- ggVisualizeRkiAge: Day <- value <- variable <- NULL
11.0.6:
- BUGFIX:
- app_server.R handles parameterfiles with flexible dimensions
11.0.4
- UPDATES:
- koelnpara (version 11 foramt, 27 variables)
11.0.2
- UPDATES:
- obkpara (version 11 format, 27 variables)
11.0.0
- CHANGES:
- Transitions removed: Intensive -> Healthy, Ventilation -> Aftercare, and
IntensiveAftercare -> Healthy
- This affects variables: x9, x25, x10, x28, and x14
- The number of states remains the same
10.6.6
- UPDATE:
- nrwpara 18.11.2020
10.6.4
- UPDATE:
- obkpara 18.11.2020
10.6.2
- BUGFIX:
- icudata, icudataFull: double entries removed using unique
10.6.0
- UPDATES:
- New parameter bounds (2nd Update)
10.5.2
- UPDATES:
- nrwpara 18.11.2020
10.5.0
- CHANGES:
- Modified parameter bounds (stricter)
- NEWS:
- Old bound values can be accessed via getBoundsOld()
10.4.8
- UPDATES:
- deutschlandpara from 15.11.2020 run
- nrwpara from 15.11.2020 run
- koelnpara from 15.11.2020 run
- obkpara from 15.11.2020 run
10.4.6
- CHANGES:
- Optimization runs use no overlap and shorter warm-up period (2 weeks)
10.4.4
- UPDATES:
- rkidata, icudata from 15.11.2020
10.4.2
- UPDATES:
- obk, koeln, nrw: first results from 15.11.2020
10.4.0
- CHANGES:
- new upper bound AmntDaysInfectedToHospital: 14 instead of 21 days
10.3.6
- BUGFIX:
- Correct End Days in runoptDirect()
10.3.4
- BUGFIX:
- Correct Starting Days in runoptDirect()
10.3.2
- BUGFIX:
- Correct order in getRkiData()
10.3.0
- BUGFIX:
- Perform data correction after the one case per row only correction in getRkiData()
10.2.22
- koelnpara, nrwpara, deutschlandpara results
10.2.20
- obkpara.R uses 400 funevals
10.2.18
- obkpara
10.2.16
- visualizeGraph() imports plot.igraph from igraph
10.2.14
- BUGFIX:
- rkidata manually fixed (should be done automatically, see issue 37)
10.2.12
- CHANGES
- testRepeats accepts new parameter: testRepeats. Default value = 3
10.2.10
- UPDATES:
- new obkpara.R, koelnpara.R, nrwpara.R and deutschlandpara.R settings
10.2.8
- BUGFIX:
- runoptDirect:
- date handling fixed
10.2.6
- BUGFIX:
- updateRkidataFile() uses Meldedatum to select rkidata:
rkidata <- rkidataFull[which(rkidataFull$Meldedatum >= as.Date("2020-09-01")), ]
- getRkiData() checks if (length(date_range[!date_range %in% rki$Refdatum]) >0)
- CHANGES:
- run configs (dates) in obk, koeln, nrw, deutschland modified (dates mut be later than Sep 1)
10.2.4
- CHANGES:
- print/verbosity restructured
- The following functions require an explicit specification
of their parameters:
- getRegionRki(): region
babsimHospital 10.2.2
- CHANGES:
- runopt() replaced by runoptdirect()
babsimHospital 10.2.0
- CHANGES:
- The following functions require an explicit specification of the
conf parameter (no default is used to prevent errors):
- getConfFromData() does not provide an default settings
- getDailyMaxResults()
- babsimHospital()
babsim.hospital 10.1.0.6
- CHANGES:
- getParameterDataFrame() returns min max values
babsim.hospital 10.1.0.4
- CHANGES:
- reorganization of file contents:
- new files babsimPara.R and babsimConf.R for parameter (optmization)
and configuration
- new version numbering
babsim.hospital 10.11.13.2
- UPDATES:
- obkpara from obk-2020-Nov.13-01.23-V10.11.12.10.RData
babsim.hospital 10.11.13.0
- CHANGES:
- getError() does not use a default conf
- babsimToolsConf() implements verbosity (default: 0)
- runoptDirect() uses verbosity
babsim.hospital 10.11.12.10
- CHANGES:
- babsimHospital() detects OS (Win, Linux, Mac) and turns of
parallel processing for Win systems
babsim.hospital 10.11.12.8
- UPDATES:
- obkpara
- koelnpara
- nrwpara
- deutschlandpara
babsim.hospital 10.11.12.6
- UPDATES:
- obkpara
- koelnpara
- nrwpara
babsim.hospital 10.11.12.4
- BUGIXES:
- icudata: double entries manually removed (develop branch)
babsim.hospital 10.11.12.2
- UPDATES:
- icudata (DIVI) 12.11.2020
- rkidata 12.11.2020
babsim.hospital 10.11.12.0
- UPDATE:
- cleanup interfaces and default parameters
- NEW:
- babsimFun.R collects optimization functions
babsim.hospital 10.11.11.0
- NEW:
- direct option in SPOT used
babsim.hospital 10.11.10.2
- UPDATES:
- obkpara 20201109PM
- nrwpara 20201109PM
babsim.hospital 10.11.10.0
- UPDATES:
- icudata (DIVI) 9.11.2020
- rkidata 10.11.2020
babsim.hospital 10.11.9.0
- UPDATES:
- obkpara 20201108PM
- NEWS:
- runoptLasso(): Optimization using Lasso instead of Kriging (experimental)
babsim.hospital 10.11.8.2
- UPDATES:
- icudata (DIVI) 8.11.2020
- rkidata 8.11.2020
babsim.hospital 10.11.8.0
- CHANGES:
- data download and handling for icudata and rkidata reorganized:
- rkidata and rkidataFull
- icudata and icudataFull
babsim.hospital 10.11.7.0
- CHANGES:
- modelOptimizeHospital() removed
- visualizeGraph() uses checkSimPara()
- UPDATES:
- icudata (DIVI) 7.11.2020
babsim.hospital 10.11.6.12
- UPDATES:
- parameter sets updated (optimization results from 5. Nov. 2020):
- nrwpara
- koelnpara
- obkpara
babsim.hospital 10.11.6.10
- UPDATES:
- icudata DIVI 6.11.2020
babsim.hospital 10.11.6.8
- CHANGES:
- simmerplot mv to man/figures
babsim.hospital 10.11.6.6
- CHANGES:
- simmerplot mv to man/figures
babsim.hospital 10.11.6.4
- CHANGES:
- vignette PDF compacted via
tools::compactPDF("vignettes", gs_quality = "ebook")
babsim.hospital 10.11.6.2
- CHANGES:
- cleanup:
- vignettes renamed
- subfolder ForTheExpert
- INTERNAL_DATA.md included in bundeslanddata.R
- INTERNAL_DATA.md removed
- README.Rmd: fig.path = "man/figures/README-" changed to fig.path = ".",
babsim.hospital 10.11.6.0
- CHANGES:
- rkidata (switched Refdatum <-> Meldedatum) 6.11.2020
babsim.hospital 10.11.5.8
- CHANGES:
- sysdata.rda removed, were replaced by bundeslanddata.rda
babsim.hospital 10.11.5.6
- UPDATE:
- icudata 5.11.2020
babsim.hospital 10.11.5.4
- UPDATE:
- results koelnpara 2020.11.4 PM
babsim.hospital 10.11.5.2
- NEW:
- runopt() accepts argument funEvalsFactor with default value 0
babsim.hospital 10.11.5.0
- CHANGES:
- rkidata (switched Refdatum <-> Meldedatum) 5.11.2020
- switchRkiRefdatumToMeldedatum updated
babsim.hospital 10.11.4.18
- NEW:
- getBestParameter()
- smoothParameter()
babsim.hospital 10.11.4.16
- deutschlandpara 20201103PM
babsim.hospital 10.11.4.14
- runopt() uses
- retries=100
- designControl does not use inequalityConstraint=g anymore
babsim.hospital 10.11.4.12
- CHANGES:
- ggVisualizeIcu() considers theat faelle_covid_aktuell include faelle_covid_aktuell_beatmet, so
we substract faelle_covid_aktuell_beatmet
babsim.hospital 10.11.4.10
- CHANGES:
- koelnpara 20201103PM2
- nrwpara 20201103PM2
- deutschlandpara 20201103PM
babsim.hospital 10.11.4.8
- CHANGES:
- obkpara 20201104AM-5
- icudata DIVI 4.11.2020
babsim.hospital 10.11.4.6
- CHANGES:
- rkidata uses Meldedatum
babsim.hospital 10.11.4.4
* CHANGES:
* rkidata as provided by RKI from 4.11.2020
babsim.hospital 10.11.4.2
- BUG (partially fixed):
- TestSimStartDate = "2020-09-20" does not work for OBK data. Use
TestSimStartDate = "2020-09-21" instead. Possible reason: not suffient data in obkdata?
babsim.hospital 10.11.4.0
- NEWS:
- runopt() accepts Overlap (= 7)
babsim.hospital 10.11.03.14
- NEWS:
- runopt() accepts TestFieldStartDate = "2020-10-20" and TestSimStartDate = "2020-09-20"
babsim.hospital 10.11.03.12
- CHANGES:
- examples reduced (dontrun)
babsim.hospital 10.11.03.10
- CHANGES:
- runopt() stores results in subfolder results
babsim.hospital 10.11.03.8
- CHANGES:
- runopt() stops if dates are incorrect
babsim.hospital 10.11.03.6
- CHANGES:
- icudata (DIVI) Stand 3.11.2020
babsim.hospital 10.11.03.4
- CHANGES:
- rkidata uses Meldedatum
babsim.hospital 10.11.03.2
- BUGFIX:
- runopt() uses correct configuration
- CHANGES:
- rkidata as provided by RKI
- nowcast vignette: eval = FALSE for all snipplets
babsim.hospital 9.11.03.0
- BUGFIX:
- runopt() uses train and test data
babsim.hospital 9.11.02.2
- BUGFIX:
- runopt() uses corrected data
babsim.hospital 9.11.02.0
- BUGFIX:
- runopt() uses full simData and fieldData
babsim.hospital 8.11.02.10
- CHANGES:
- runoptsynth() accepts data argument
babsim.hospital 8.11.02.08
- CHANGES:
- koelnpara20201102AM-7
babsim.hospital 8.11.02.06
- CHANGES:
- getObkData() accepts data argument
babsim.hospital 8.11.02.04
- UPDATE:
- icudata (DIVI) 2.11.2020
- obkpara 20201102AM-10
babsim.hospital 8.11.02.02
- UPDATE:
- Vignette Nowcast updated
babsim.hospital 8.11.02.00
- UPDATE:
- rkidata (switched to Meldedatum) from Nov 2nd 2020
- NEW:
- Vignette Nowcast
- koelnpara run 20201102AM
babsim.hospital 8.11.01.20
*CHANGES:
* extendRki uses median( tail(dataAgg, 7)$Freq)
babsim.hospital 8.11.01.18
- UPDATE:
- obkpara 20201031PM-22
babsim.hospital 8.11.01.16
- NEW:
- ggVisualizeIcu()
- ggVisualizeRki()
babsim.hospital 8.11.01.14
- NEW:
- app has analysis tab
babsim.hospital 8.11.01.12
- CHANGES:
- typos fixed: rkidata uses Meldedatum
babsim.hospital 8.11.01.10
- NEW:
- switchRkiRefdatumToMeldedatum()
- switchRkiMeldedatumToRefdatum()
- rkidata uses Meldedatum
babsim.hospital 8.11.01.8
- CHANGES:
- icudata (DIVI) 1.11.2020
babsim.hospital 8.11.01.6
- CHANGES:
- new plot arrangement for simulations
babsim.hospital 8.11.01.4
- CHANGES:
- ggVisualize functions accept option
simplify. Defaault is true.
babsim.hospital 8.11.01.2
- CHANGES:
- rkidata
babsim.hospital 8.11.01.0
- NEW:
- App display preview (extended data)
babsim.hospital 7.10.31.18
- NEW:
- function ggVisualizeRkiExtended()
babsim.hospital 7.10.31.16
- NEW:
- function ggVisualizeRkiAge()
babsim.hospital 7.10.31.14
- CHANGES:
- deutschlandpara AM 20201031A-8
babsim.hospital 7.10.31.12
- NEW:
- preparing new function ggVisualizeRkiAge()
babsim.hospital 7.10.31.10
- CHANGES:
- nrwpara20201031A-8
babsim.hospital 7.10.31.8
- CHANGES:
- bundeslanddata (replacement for sysdata.rda)
- bundeslanddata uses ASCII characters only
babsim.hospital 7.10.31.6
- CHANGES:
- icudata 20201031 update
- obkpara 20201031-17 update
- rkiToBabsimData() handles age and gender
babsim.hospital 7.10.31.4
- CHANGES:
- under preparation: ggVisualizeRkiEvents()
babsim.hospital 7.10.31.2
- CHANGES:
- nrwpara 20201030-26
babsim.hospital 7.10.31.0
- CHANGES:
- obkpara20201031-23
- rkidata
babsim.hospital 7.10.30.2
- CHANGES:
- obkpara 30.10.2020
babsim.hospital 7.10.30.0
- CHANGES:
- new bounds based on info from OBK
babsim.hospital 6.10.30.2
- CHANGES:
- obkpara20201030-16
babsim.hospital 6.10.30.0
- CHANGES:
- icudata 30.10.2020
- rkidata 30.10.2020
- compacted ‘babsim-vignette-RKI-DIVI.pdf’ via
tools::compactPDF(gs_quality = "ebook",
paths = "/Users/bartz/workspace/babsim.hospital/vignettes")
- BUGFIX:
- getError() fixed and extended
babsim.hospital 5.10.29.18
- CHANGES:
- koelnpara202010262 (required by vignette RKI/DIVI)
babsim.hospital 5.10.29.16
- CHANGES:
- koelnpara20201029-19
babsim.hospital 5.10.29.14
- CHANGES:
- koelnpara20201029-13
babsim.hospital 5.10.29.12
- CHANGES:
- obkdata20201028-122
babsim.hospital 5.10.29.10
- CHANGES:
- obkpara20201028-118
- icudata 29.20.2020
babsim.hospital 5.10.29.8
- CHANGES:
- deutschlandpara and
- nrwpara combined TBB+FR
babsim.hospital 5.10.29.6
- CHANGES:
- deutschlandpara20201028-113
babsim.hospital 5.10.29.4
- CHANGES:
- nrwpara20201028-210
babsim.hospital 5.10.29.2
- CHANGES:
- obkdata20201028-117
- koelnpara20201028-114
babsim.hospital 5.10.29.0
- CHANGES:
- rkidata 29.10.2020
babsim.hospital 5.10.28.26
- CHANGES:
- deutschlandpara20201028-16
babsim.hospital 5.10.28.24
- CHANGES:
- vignette updated
babsim.hospital 5.10.28.22
- CHANGES:
- README.Rmd updated
babsim.hospital 5.10.28.20
- CHANGES:
- app() does not show Bochum
babsim.hospital 5.10.28.18
- CHANGES:
- nrwpara20201028-21
babsim.hospital 5.10.28.16
- CHANGES:
- extendRkiData accepts R0 vector (start, end)
- app implements R0 ranges, e.g., value = c(1.4, 1.5),
babsim.hospital 5.10.28.14
- CHANGES:
- deutschlandpara 20201028-14
babsim.hospital 5.10.28.12
- CHANGES:
- visualizeGraph() uses babsim.hospital::synthpara
babsim.hospital 5.10.28.10
- CHANGES:
- deutschlandpara 20201028-12
babsim.hospital 5.10.28.8
- CHANGES:
- extendRki() first ideas on how to use a dynamic R0 value (only comments)
- app() shows Germany
babsim.hospital 5.10.28.6
- CHANGES:
- deutschlandpara 20201027 (many short runs)
babsim.hospital 5.10.28.4
- CHANGES:
- icudata (DIVI) 28.10.2020
- rkidata 28.10.2020
babsim.hospital 5.10.28.2
- CHANGES:
- owos version
babsim.hospital 5.10.28.0
- CHANGES:
- merged owos+bab10 version
babsim.hospital 5.10.27.4
- CHANGES:
- vignette updated/extended
babsim.hospital 5.10.27.2
- CHANGES:
- code cleanup
- icudata (DIVI) 27.20.2020
babsim.hospital 5.10.27.0
- CHANGES:
- renamed babsim -> babsim.hospital
- moved to OWOS
babsim.hospital 4.10.26.22
- CHANGES: cleanup
babsim.hospital 4.10.26.20
- CHANGES: vignette-rki-dvi sources fixed
babsim.hospital 4.10.26.18
- NEW: koelnpara202010262
babsim.hospital 4.10.26.16
- CHANGES:
- runopt returns reslist
babsim.hospital 4.10.26.14
- CHANGES
- koelnpara 20201026-12
babsim.hospital 4.10.26.12
- NEW
- visualizeRkiEvents() can handle StartDate and Region
babsim.hospital 4.10.26.10
- NEW
- visualizeRkiEvents() to visualize preprocessed RKI data
babsim.hospital 4.10.26.8
- CHANGES:
- getError() reverted
- icuWeight conf$w2 is a vector with default setting:
w2 = c(1,10)
babsim.hospital 4.10.26.6
- CHANGES: getError() was rewritten
babsim.hospital 4.10.26.4
- CHANGES: icudata 26.10.2020
babsim.hospital 4.10.26.2
- CHANGES: rkidata 26.10.2020
babsim.hospital 4.10.26.0
- CHANGES: koelnpara 20201025 updated
babsim.hospital 4.10.25.10
- CHANGES: tests run faster
babsim.hospital 4.10.25.8
- NEW: updateParaFile()
babsim.hospital 4.10.25.6
- NEW:
- vignettes added
babsim.hospital 4.10.25.4
- NEW:
- babsim.hospitalconstraints with constraintG()
- icudata 25.20.2020
- runopt() modified
babsim.hospital 4.10.25.2
- CHANGES:
- rkidata 25.10.2020
babsim.hospital 4.10.24.8
- CHANGES: icudata 24.10.2020, bochumdata 20201023
babsim.hospital 4.10.24.6
- CHANGES:
- deutschland, koeln, nrw, obk 202010231
babsim.hospital 4.10.24.4
- CHANGES:
- bochum 2nd run
babsim.hospital 4.10.24.2
- CHANGES:
- rkidata 24.10.2020
babsim.hospital 4.10.24.0
- NEW:
- bochum
babsim.hospital 4.10.23.0
- CHANGES:
- icu
- rki
babsim.hospital 4.10.22.2
- CHANGES:
- getBounds():
upper bound for x1 AmntDaysInfectedToHospital changed from 14 back to 21
babsim.hospital 4.10.22.0
- CHANGES:
- koelnpara
- nrwpara
- obkpara
- rkidata
babsim.hospital 4.10.21.4
- CHANGES:
- rkidata 21.10.2020
- obkpara20201020
- nrwpara (1st run)
- koelnpara (1st run)
- resulceNames, resourceEval in babsim.hospitalrun
babsim.hospital 4.10.21.0
- BUGFIX:
- funOptimizeSim(): Missing conf=conf argument added to call
getError(res=res, conf=conf)
babsim.hospital 3.10.20.2
- CHANGES:
- icudata updated 2020-10-20
babsim.hospital 3.10.20.0
- CHANGES:
- getBounds():
upper bound for x1 AmntDaysInfectedToHospital changed from 21 to 14
- English version
babsim.hospital 2.10.20.2
- CHANGES:
- nrwpara 20.1.2020
babsim.hospital 2.10.20.0
- CHANGES:
- rkidata 20.1.2020
babsim.hospital 2.10.19.8
- CHANGES:
- icudata 19.10.2020
babsim.hospital 2.10.19.6
- CHANGES:
- obkpara 19.10.2020
- deutschlandpara 19.10.2020
- rkidata 19.10.2020
- Impressum
babsim.hospital 2.10.19.4
- CHANGES:
- rkidata 19.10.2020
babsim.hospital 2.10.19.2
- CHANGES:
- koelnpara 18.10.2020
babsim.hospital 2.10.19.0
- CHANGES:
- Versionsnummern anhand der Tage
babsim.hospital 2.2.22
- CHANGES:
- berlinpara, koelnpara, magdeburgpara, obkpara
babsim.hospital 2.2.20
- CHANGES:
- nrwpara
babsim.hospital 2.2.18
- CHANGES:
- dividata 18.10.2020 hinzugefuegt
- farben angepasst
- App aktualisiert
babsim.hospital 2.2.16
- CHANGES:
- deutschlandpara update
babsim.hospital 2.2.14
- CHANGES:
- nrwdata update
babsim.hospital 2.2.12
- CHANGES:
- rkidata update
babsim.hospital 2.2.10
- CHANGES:
- koelnpara update
babsim.hospital 2.2.8
- CHANGES:
- icudata fixed
babsim.hospital 2.2.6
- CHANGES:
- Added Berlin and Magdeburg
babsim.hospital 2.2.4
- CHANGES:
- Naming
babsim.hospital 2.2.2
- CHANGES:
- New file structure
babsim.hospital 2.2.0
- CHANGES:
- getIcuBeds() erzeugt intensiveBed statt bed
- getError() uses resource <- conf$ResourceEval
- getDailyMaxResults() loscht nicht mehr die bed Kategorie
-
envToTibble() loscht nicht mehr die bed Kategorie
-
NEW:
- conf$ResourceEval spezifiziert die auszuwertenden Ressourcen, z.B.
c("intensiveBed", "intensiveBedVentilation") für DIVI
babsim.hospital 2.1.8
- CHANGES:
- MC Plots added
babsim.hospital 2.1.6
- CHANGES:
- Titel ergaenzt
babsim.hospital 2.1.4
- BUG FIXED
- dailyMaxResults() and envToTibble() can handle
empty resources
babsim.hospital 2.1.2
- CHANGES
- Koeln data
babsim.hospital 2.1.0
- NEW
-
Shiny App
-
CHANGES
- ifelse fixed
babsim.hospital 2.0.6
- CHANGES
- data bug fixed in extendRki()
babsim.hospital 2.0.4
- CHANGES
- envToTibble() uses fieldEvent information
babsim.hospital 2.0.2
- NEW
-
envToTibble()
-
CHANGES
- Wahrscheinlichkeiten angepasst
- getDailyMaxResults: bed labels changed
* no bed, only intensiveBed and intensiveBedVentilation
babsim.hospital 1.8.2
- CHANGES
- Fixed S4 class problem
babsim.hospital 1.8.0
- NEW
- getMatrixD()
- plotting results
babsim.hospital 1.7.8
- CHANGES
- Data importing and archiving strategy
babsim.hospital 1.7.6
- CHANGES
- Consistent data handling via conf
babsim.hospital 1.7.4
- NEW:
- icu20201001
- rki20201001
babsim.hospital 1.7.2
- CHANGES:
- babsim.hospitalHospital(): sim.repeats bug fix
babsim.hospital 1.7.0
- CHANGES:
-
babsim.hospitalHospital(): new parallel / sequential handling
-
NEW:
- constraint handling (experimental), see runQuickConstraints.R
babsim.hospital 1.6.4
- CHANGES:
- risk factor B adapted
babsim.hospital 1.6.2
- CHANGES:
- updateMatrixP(): value check for risk multiplier
babsim.hospital 1.6.0
- CHANGES:
- train/test data
- weighted error
- test script runICU100TrainTest.R
babsim.hospital 1.5.6
- CHANGES:
- parallel option works again
babsim.hospital 1.5.4
- CHANGES
- otimization interface can be used with SPOT
babsim.hospital 1.5.2
- NEW
- risk attributes are used to update probabilities
babsim.hospital 1.5.0
- NEW
- risk attributes implemented
babsim.hospital 1.4.2
Merged Versions TBB+FR
babsim.hospital 1.4.0
Testing, not stable version.
- CHANGES
- new traj hadling in babsim.hospitalHospital()
babsim.hospital 1.3.10
- NEW
- getRkiData() preprocesses raw RKI data
- getRkiRisk() determines risk for RKI patients based on age and gender
babsim.hospital 1.3.8
- CHANGES
- trajList is generated from with babsim.hospitalHospital()
babsim.hospital 1.3.6
- NEW
- Parameter extended: risk factors are included
babsim.hospital 1.3.4
- NEW
- Preparing risk calculations for RKI data
babsim.hospital 1.3.2
- CHANGES
- getRealBeds() uses resource=c("bed", "intensiveBed", "intensiveBedVentilation")
as default parameter
babsim.hospital 1.3.0
- NEW:
- data structures:
- simData
- fieldData
babsim.hospital 1.2.22
- NEW:
- getConfFromData()
babsim.hospital 1.2.20
- CHANGES:
- ICUBeds20200822 geloescht
babsim.hospital 1.2.18
- NEW:
- Aktualisierte RKI/DIVI Daten
babsim.hospital 1.2.16
- CHANGES:
- getDailyMaxResults() uses conf list
babsim.hospital 1.2.14
- CHANGES:
- getRealBeds() handles getIcuBeds()
babsim.hospital 1.2.12
- CHANGES:
- getError() handles getIcuError()
- getIcuError() deleted
babsim.hospital 1.2.10
- CHANGES:
- getError() simplified
babsim.hospital 1.2.8
- CHANGES:
- getRealBedsOLD() removed
- simulateHospital() removed, use the following code instead:
x <- rep(0.2,30)
para <- mapXToPara(x)
conf <- babsim.hospitalToolsConf()
res <- modelResultHospital(para=para, conf=conf)
getError(res)
p <- plotDailyMaxResults(res)
print(p)
babsim.hospital 1.2.6
- NEWS:
- getBounds()
-
Sim100 data
-
CHANGES
- Default values of x15 and x19 modified
- Default values of DurationInfected2Hospital (shift = 1) changed
babsim.hospital 1.2.4
- NEWS:
- mapXToPara (replaces simulateHospital)
- synthSimCovid20201130: synthetic data
-
synthBeds20201130: synthetic data
-
CHANGES:
- babsim.hospitalToolsConf implements
- simulationData = babsim.hospital::dataCovidBeds20200624,
- fieldData = babsim.hospital::GABeds220200624
babsim.hospital 1.2.3*
- CHANGES:
- babsim.hospitalToolsConf has the following additional list entries:
* logLevel (int) 0 = no logging, 1 = logging. Default: 0.
* maxCapacity (num) Maximum capacity used for babsim.hospitalHospital resources. Default: 1e6.
* dataset (chr) Can be "GA" or "ICU". Default: "GA".
* infectionDates List with the following entries:
* StartDate (chr) Start date of the infection data, first day. Default: "2020-03-03"
* EndDate (chr) End date of the infection data, last day. Default: "2020-06-24"
* bedDates List with the following entries:
* StartDate (chr) Start date of the bed data, first day. Default: "2020-03-03"
* EndDate (chr) End date of the bed data, last day. Default: "2020-06-24"
* predictionDates List with the following entries:
* StartDate (chr) Start date of the prediction interval, first day. Default: "2020-03-03"
* EndDate (chr) End date of the prediction interval, last day. Default: "2020-06-24"
babsim.hospital 1.2.1
- CHANGES:
- Aktualisierung der Ergebnisdateien der Simulationslaeufe
- bart20h.Rmd aktualisiert
babsim.hospital 1.2.0
- CHANGES:
- Tests fur getError und getIcuError hinzugefuegt
babsim.hospital 1.1.10
- CHANGES:
- getDailyMaxResults errors fixed (simStartDay anstelle von StartDay)
- test.getDailyMaxResults hinzugefuegt fuer GA und ICU
babsim.hospital 1.1.8
- CHANGES
- getIcuBeds benötigt kein Start- und EndDate als eigenstaendige Parameter
- getRealBeds erzeugt time Information, die mit 0 (und nicht, wie vorher, bei 1) anfaengt
- getIcuBeds erzeugt time Information, die mit 0 (und nicht, wie vorher, bei 1) anfaengt
-
checkSimPara verwendet minDays = 1e-6 statt minDays = 0
-
NEWS:
-
test.bed testet ICU Betten
-
ERRORS:
- Das R-Skript source("runICU1000NotParallel.R") (Verzeichnis babsim.hospital/bart20h/Runs.d) stuerzt mit der folgenden Fehlermeldung ab:
Error: 'patient112184' at 107.42 in [Branch]->Timeout->[Release]:
missing value (NA or NaN returned)
In addition: Warning message:
qgamma(u, shape = shape, rate = rate) : NaNs produced
babsim.hospital 1.1.4
- CHANGES
- babsim.hospitalHospitalControl renamed to babsim.hospitalHospitalPara
- babsim.hospitalHospitalPara uses minVal instead of 0.0 to avoid division by zero
- ICU Betten verwenden Date Format: ICUBeds20200822$date <- as.Date(ICUBeds20200822)
- rkiTobabsim.hospitalArrivals uses time label: return(data.frame(time = getArrivalTimes( rkiAgg$Freq )))
instead return(data.frame(getArrivalTimes( rkiAgg$Freq )))
- conf$maxCapacity = 1e6 (increased from 1e4)
- getArrivalTimes verwendet RNGkind("Wich")
-
rtgamma verwendet RNGkind("Wich")
-
NEW:
- test.bed Bettendaten werden getestet
-
test.trajectories hat einen Test fuer riesige Datenmengen (bundesweite COVID-19 Faelle)
-
ERRORS:
- Bei grossen Datensaetzen (> 200.000): arrival Times nicht eindeutig, z.B.:
dim(arrivalTimes) ergibt 230187 aber dim(unique(arrivalTimes)) ergibt 230186.
Daher : RNGkind("Wich") .
sum(duplicated(runif(1e8))) >0, aber RNGkind("Wich") sum(duplicated(runif(1e8))) == 0.
Siehe: https://stackoverflow.com/questions/51425656/why-does-runif-have-less-unique-values-than-rnorm
babsim.hospital 1.1.2
- CHANGES:
- New: arrivalTimes <- c(arrivalTimes, runif(xDaily[i],0,1) + (i -1) )
-
Old: arrivalTimes <- c(arrivalTimes, runif(xDaily[i],0,1) + i )
-
ERRORS:
- source("runGA1000.R") ergibt (packageVersion("SPOT") ‘2.0.62’):
-
Warnmeldungen:
1: In duplicateAndReplicateHandling(xnew, x, lower, upper, control) :
SPOT created a duplicated solution. This can be due to early convergence or bad configuration. Duplicate is replaced by random solution.
2: In duplicateAndReplicateHandling(xnew, x, lower, upper, control) :
SPOT created a duplicated solution. This can be due to early convergence or bad configuration. Duplicate is replaced by random solution.
3: In duplicateAndReplicateHandling(xnew, x, lower, upper, control) :
SPOT created a duplicated solution. This can be due to early convergence or bad configuration. Duplicate is replaced by random solution.
4: In duplicateAndReplicateHandling(xnew, x, lower, upper, control) :
SPOT created a duplicated solution. This can be due to early convergence or bad configuration. Duplicate is replaced by random solution.
-
source("runICU1000.R") ergibt:
- Error in UseMethod("get_mon_resources", unlist(list(.envs))[[1]]) :
no applicable method for 'get_mon_resources' applied to an object of class "character"
In addition: Warning message:
In mclapply(1:simRepeats, function(i) { :
scheduled core 1 encountered error in user code, all values of the job will be affected
babsim.hospital 1.1.0
- CHANGES:
- babsim.hospitalHospitalTrajectories() benutzt getDecision()
babsim.hospital 1.0.46
- COMMENT:
-
ICU data does crash
-
CHANGES:
-
getDailyMaxResults() clean up
-
NEW:
- getDecision() to prepare babsim.hospital 1.1.0
- more test functions
babsim.hospital 1.0.44
- NEW:
- checkSimPara()
- ensureRangeOpen()
-
weitere Tests in test.tools
-
CHANGES:
- maxCapacity wird in conf und nicht mehr in para gespeichert
- modelResultHospital korrigiert para Werte mittels checkSimPara
babsim.hospital 1.0.42
- NEW:
- data GABeds20200624
- data dataICUBeds20200821
- function getRealBedsOLD (compatibility)
- test rtgamma
*CHANGES
* function getIcuBeds simplified
* function getRealBeds simplified
babsim.hospital 1.0.40
- CHANGES:
-
modelResultHospital uses rkiTobabsim.hospitalArrivals
-
NEW
- function rkiTobabsim.hospitalArrivals
babsim.hospital 1.0.38
- CHANGES:
- rtgamma implements a shift 8Translation) parameter and alpha upper quantile
of gamma distribution. All values above alpha are truncated.
babsim.hospital 1.0.36
- NEW:
-
babsim.hospitalToolsConf to configure conf
-
CHANGES:
- babsim.hospitalHospitalPara list speichert GammaShapeParameter
- funOptimizeSim erzeugt para mit GammaShapeParameter
- Durchgaengig conf und para
babsim.hospital 1.0.34
- NEWS:
- resRki data added
- Abstract vorbereitet
- babsim.hospital benutzt trunkierte Gamma Verteilung mit 0.95 Grenze
- experiment runSPOTICU1000TruncDist
babsim.hospital 1.0.32
- CHANGES: gamma dist
babsim.hospital 1.0.30
- CHANGES:
- funWrapOptimize: new parameter
babsim.hospital 1.0.28
- NEW:
- getIcuBeds()
- getDailyMaxResults() has new parameter ICU
babsim.hospital 1.0.26
- NEW:
- readCsvRecursively()
- getDiviData()
- Data: icu20200822 und rki 20200822
babsim.hospital 1.0.24
- Cleanup:
- babsim.hospitalHospital does not use argument GammaShapeParameter
- babsim.hospitalHospitalTrajectories does not use arguments arrivalTimes and simRepeats
- babsim.hospitalHospitalTrajectories used truncated Gamma dist. (rtgamma) Max. val = alpha x mean value
- DurationInfected2Hospital hat eine untere Grenze (min = 2 Tage)
- Ergebnisse von runSpot500b hinzugefügt
babsim.hospital 1.0.22
- Grundgerüst des Reports bart20h erstellt.
babsim.hospital 1.0.20
- Report bart20h bis SPOT Aufruf (Optimierung)
babsim.hospital 1.0.18
- new: postprocessEnvs()
babsim.hospital 1.0.16:
- new: Dokumentation und Tests funktionieren mit babsim.hospitalHospitalTrajectories()
babsim.hospital 1.0.14
- new: babsim.hospitalHospitalTrajectories
babsim.hospital 1.0.12
- Last version before "cleanup"
babsim.hospital 1.0.10
- New state "healthy" added
- Documentation and new examples
babsim.hospital 1.0.8
- Only cleanup. Added res250.rda
babsim.hospital 1.0.7
- new option parallel in babsim.hospitalHospitalPara
babsim.hospital 1.0.6
- new data dataCovidBeds20200624
babsim.hospital 1.0.4
- SPOT optimization as an example
babsim.hospital 1.0.0:
- Initial version
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R Package Documentation
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babsim.hospital
11.8.8
- NEW:
- function funBabsimHospital() added (moved from package SPOT)
- updateRkidatafile.R: Formatting improved
11.8.6
- CHANGES
- updateRkidataFile.R updated
- updateIcudataFile
11.8.4
- CHANGES
- Roxygen note: 7.1.2
- Typos in vignette
11.8.2
- CHANGES
- 'rmarkdown' package declared as a dependency (in the suggests field)
11.8.0
- CHANGES
- Minor typos fixed
11.7.26
- NEW:
- UK data analysis added:
- vignette-NumericalMethods
11.7.24
- NEW:
- runoptUK accept new argument
factorUKto adapt the probabilities for ventilated patients.
11.7.22
- NEW:
- getTrainTestFunction accepts additional argument simRepeats (default=1 for Windows)
11.7.20
- NEW:
- getAndCheckTrainData() function
- checkTrainConfig()
- checkTestData()
- getTestData()
- checkTestConf()
11.7.18
- CHANGES:
- getTrainTestObjFun.R from develop to master.
11.7.16
- CHANGES:
- logLevel <- 0 in getTrainTestObjFun.R
11.7.14
- BUGFIX: as.Date() provides origin (origin = "1970-01-01") to fix error: Quitting from lines 618-626 (babsim-vignette-introduction.Rmd) Error: processing vignette 'babsim-vignette-introduction.Rmd' failed with diagnostics: 'origin' must be supplied:
11.7.12
- BUGFIX: Found the following (possibly) invalid URLs: URL: https://www.destatis.de/DE/Themen/Laender-Regionen/Regionales/Gemeindeverzeichnis/_inhalt.html From: man/GermanCounties.Rd man/GermanStates.Rd Status: 400 Message: Bad Request
11.7.10
- CHANGES:
- icudata.R, icudataFull.R, rkidata.R, and rkidataFull.R files added
11.7.24
- NEW:
- runoptUK accept new argument
factorUKto adapt the probabilities for ventilated patients.
11.7.22
- NEW:
- getTrainTestFunction accepts additional argument simRepeats (default=1 for Windows)
11.7.20
- NEW:
- getAndCheckTrainData() function
- checkTrainConfig()
- checkTestData()
- getTestData()
- checkTestConf()
11.7.18
- Cleanup: code, vignette master
11.7.14
- CHANGES:
- getTrainTestObjFunctions: logLevel <- 0
11.7.12
- NEWS
- Vignette updated
11.7.10
- NEWS
- ukpara added
- vignette for master students
11.7.8
- BUGFIX
- mc.coresN is handled correctly
- babsimHospital example uses conf correctly
11.7.6
- BUGFIX:
- meesagef messageDataRange are exported
11.7.4
- NEW:
- vaccine counts added
11.7.2
- package plotly not suggested anymore
11.7.0
- New data structures
11.6.0
- Improved prediction /conf intervals
11.5.18
- more regions
- envToTibble does not use a default conf argument
11.5.16
- Faster evalutions:
- getDecision() rewritten
- updateP() rewritten
11.5.14
- CRAN comments fixed
11.5.12
- CHANGES:
- Cleanup
- Accelerate testing (region is set to 5374 whenever possible)
11.5.10
- CHANGES:
- babsimrun returns list
11.5.8
- CHANGES:
- importFrom dependencies reduced. The following packages were removed from the
DESCRIPTION Imports list:
- Metrics, simmer.plot, rpart.plot
- examples use smaller data sets
- importFrom dependencies reduced. The following packages were removed from the
DESCRIPTION Imports list:
11.5.6
*new para file: * obkpara with 29 variables (135 obs)
11.5.4
- new para file:
- nrwpara with 29 variables (5 results)
11.5.2
- new para file:
- koelnpara with 29 variables
11.5.0
- WARNING: runoptDirect() uses x0 <- getStartParameter(region= -1), because there is no previous region parameter set
- NEW:
- edge: IntensiveAftercare -> Healthy
- UPDATE:
- Probabilities and Durations refined based on feedback from doctors
11.4.6.
* R0 ranges from 0.1
* Error function tests
* Hall of Fame
11.4.4
* CHANGES
* getBounds(): new lower limit (1 instead of 0.5) for Risk Male
11.4.2
* CHANGES:
* funEvalsFactor = 0
11.4.0
* UPDATES:
* config for new local runs (over)
11.3.10
* UPDATES
* local koeln results (maans03)
11.3.8
* UPDATES:
* local obkresults (maans05)
11.3.6
* UPDATES:
* rkidata, icudata 25.11.2020
* local nrwresults (maans04)
11.3.4
* NEWS:
* *over run configurations
11.3.2
- CHANGES:
- koelnpara.R and nrwpara.R use the same run config as obkpara (initial designs, funevals, ..)
- UPDATES:
- rkidata 24.11.2020
11.3.0
- BUGFIX
- getError fixed
11.2.2
- UPDATE:
- new obkpara
11.2.0
- CHANGES:
- New train/test set splittimg procedure
- runoptDirect uses new parameter: tryOnTestSet (default: TRUE)
11.1.16
- UPDATES:
- locally optimized parameter sets koelnpara (tbb)
11.1.14
- UPDATES
- locally optimized parameter sets (tbb)
11.1.12
- UPDATES:
- Cleanup results
11.1.10
- UPDATES:
- rkidata 22.11.2020
- icudata 22.11.2020
11.1.8
- BUGFIX:
- getStartParameter() generates vector, not a list
11.1.6
- CHANGES: Typo fixed
11.1.4
- UPDATES:
- getStartParameter() uses region information (new arg "region")
- nrwpara, nrwarchive fixed
11.1.2
* UPDATES:
* current best parameter setting:
* obkpara.rda, koelnpara.rda, and nrwpara.rda contain the current best
known parameter set
* archived parameter sets:
* results from all runs in obkarchive, koelnarchive, nrwarchive
11.1.0
- CHANGES:
- nrwpara.R
- funevals = 2000 (before: 1000)
- size = 500 (before: 300)
- simrepeats = 5 (before: 10)
- nrwpara.R
11.0.64
- CHANGES:
- Organize results
11.0.62
- NEW:
- results dir added
11.0.60
- NEW:
- First draft of analysis script
11.0.58
- CHANGES:
- *para.R files use "_" instead of "-" as separator
- archive folder
11.0.56
- NEW:
- testing archive
11.0.54
- CHANGES:
- obkpara.R uses 1000 repeats (complete opt. runs)
11.0.52
- CHANGES:
- meta runs uses icuWeights = c(1,1)
11.0.50
- CHANGES: testRepeats = 10
11.0.48:
- UPDATES:
- nrwpara 20.11.20 (17 obs) with y min = 912.14
11.0.46:
- UPDATES:
- koelnpara with icuWeights (1,1) (73 obs) with min y = 12.40
11.0.44
- UPDATES:
- nrwpara 20.11.20 (28 obs) with y min = 912.14
11.0.42:
- UPDATES:
- koelnpara 20.11.20 (100 obs) with min y = 71.14
11.0.40
* CHANGES:
* koelnpara.R uses: icuWeights = c(1,1)
10.0.38:
- UPDATES:
- koelnpara 20.11.20 (100 obs)
11.0.36
* CHANGES:
* obkpara.R uses: icuWeights = c(1,1)
11.0.34
* CHANGES:
* nrwpara.R uses: icuWeights = c(1,1)
11.0.32
* UPDATES:
* koelnpara 20.11.20 (42 obs.)
11.0.28
* UPDATES:
* nrwpara 20.11.20
11.0.26:
- UPDATES:
- koelnpara 20.11.20 (28 obs.)
11.0.24:
- NEWS:
- koelnparameta.R
- obkpara.R
11.0.22:
- CHANGES:
- Slightly increased bounds (constraints)
- Risk male = 1.5 (from 2)
11.0.20
- UPDATES:
- koelnpara (version 11 format, 27 variables, 100 observations)
11.0.18:
- CHANGES:
- Training and testing times modiefied (extended warm-up periods)
- Prob./duration graphs updated
11.0.16
- UPDATES:
- nrwpara (10 observations)
11.0.14
- UPDATES:
- koelnpara (version 11 format, 27 variables, 67 observations)
11.0.12
- UPDATES:
- koelnpara (version 11 format, 27 variables, 47 observations)
11.0.10
- BUGFIX:
- preloadFunctions.R handles parameterfiles with flexible dimensions
11.0.8
- BUGFIX:
- ggVisualizeRkiAge: Day <- value <- variable <- NULL
11.0.6:
- BUGFIX:
- app_server.R handles parameterfiles with flexible dimensions
11.0.4
- UPDATES:
- koelnpara (version 11 foramt, 27 variables)
11.0.2
- UPDATES:
- obkpara (version 11 format, 27 variables)
11.0.0
- CHANGES:
- Transitions removed: Intensive -> Healthy, Ventilation -> Aftercare, and IntensiveAftercare -> Healthy
- This affects variables: x9, x25, x10, x28, and x14
- The number of states remains the same
10.6.6
- UPDATE:
- nrwpara 18.11.2020
10.6.4
- UPDATE:
- obkpara 18.11.2020
10.6.2
- BUGFIX:
- icudata, icudataFull: double entries removed using unique
10.6.0
- UPDATES:
- New parameter bounds (2nd Update)
10.5.2
- UPDATES:
- nrwpara 18.11.2020
10.5.0
- CHANGES:
- Modified parameter bounds (stricter)
- NEWS:
- Old bound values can be accessed via getBoundsOld()
10.4.8
- UPDATES:
- deutschlandpara from 15.11.2020 run
- nrwpara from 15.11.2020 run
- koelnpara from 15.11.2020 run
- obkpara from 15.11.2020 run
10.4.6
- CHANGES:
- Optimization runs use no overlap and shorter warm-up period (2 weeks)
10.4.4
- UPDATES:
- rkidata, icudata from 15.11.2020
10.4.2
- UPDATES:
- obk, koeln, nrw: first results from 15.11.2020
10.4.0
- CHANGES:
- new upper bound AmntDaysInfectedToHospital: 14 instead of 21 days
10.3.6
- BUGFIX:
- Correct End Days in runoptDirect()
10.3.4
- BUGFIX:
- Correct Starting Days in runoptDirect()
10.3.2
- BUGFIX:
- Correct order in getRkiData()
10.3.0
- BUGFIX:
- Perform data correction after the one case per row only correction in getRkiData()
10.2.22
- koelnpara, nrwpara, deutschlandpara results
10.2.20
- obkpara.R uses 400 funevals
10.2.18
- obkpara
10.2.16
- visualizeGraph() imports plot.igraph from igraph
10.2.14
- BUGFIX:
- rkidata manually fixed (should be done automatically, see issue 37)
10.2.12
- CHANGES
- testRepeats accepts new parameter: testRepeats. Default value = 3
10.2.10
- UPDATES:
- new obkpara.R, koelnpara.R, nrwpara.R and deutschlandpara.R settings
10.2.8
- BUGFIX:
- runoptDirect:
- date handling fixed
- runoptDirect:
10.2.6
- BUGFIX:
- updateRkidataFile() uses Meldedatum to select rkidata: rkidata <- rkidataFull[which(rkidataFull$Meldedatum >= as.Date("2020-09-01")), ]
- getRkiData() checks if (length(date_range[!date_range %in% rki$Refdatum]) >0)
- CHANGES:
- run configs (dates) in obk, koeln, nrw, deutschland modified (dates mut be later than Sep 1)
10.2.4
- CHANGES:
- print/verbosity restructured
- The following functions require an explicit specification
of their parameters:
- getRegionRki(): region
babsimHospital 10.2.2
- CHANGES:
- runopt() replaced by runoptdirect()
babsimHospital 10.2.0
- CHANGES:
- The following functions require an explicit specification of the
conf parameter (no default is used to prevent errors):
- getConfFromData() does not provide an default settings
- getDailyMaxResults()
- babsimHospital()
- The following functions require an explicit specification of the
conf parameter (no default is used to prevent errors):
babsim.hospital 10.1.0.6
- CHANGES:
- getParameterDataFrame() returns min max values
babsim.hospital 10.1.0.4
- CHANGES:
- reorganization of file contents:
- new files babsimPara.R and babsimConf.R for parameter (optmization) and configuration
- new version numbering
- reorganization of file contents:
babsim.hospital 10.11.13.2
- UPDATES:
- obkpara from obk-2020-Nov.13-01.23-V10.11.12.10.RData
babsim.hospital 10.11.13.0
- CHANGES:
- getError() does not use a default conf
- babsimToolsConf() implements verbosity (default: 0)
- runoptDirect() uses verbosity
babsim.hospital 10.11.12.10
- CHANGES:
- babsimHospital() detects OS (Win, Linux, Mac) and turns of parallel processing for Win systems
babsim.hospital 10.11.12.8
- UPDATES:
- obkpara
- koelnpara
- nrwpara
- deutschlandpara
babsim.hospital 10.11.12.6
- UPDATES:
- obkpara
- koelnpara
- nrwpara
babsim.hospital 10.11.12.4
- BUGIXES:
- icudata: double entries manually removed (develop branch)
babsim.hospital 10.11.12.2
- UPDATES:
- icudata (DIVI) 12.11.2020
- rkidata 12.11.2020
babsim.hospital 10.11.12.0
- UPDATE:
- cleanup interfaces and default parameters
- NEW:
- babsimFun.R collects optimization functions
babsim.hospital 10.11.11.0
- NEW:
- direct option in SPOT used
babsim.hospital 10.11.10.2
- UPDATES:
- obkpara 20201109PM
- nrwpara 20201109PM
babsim.hospital 10.11.10.0
- UPDATES:
- icudata (DIVI) 9.11.2020
- rkidata 10.11.2020
babsim.hospital 10.11.9.0
- UPDATES:
- obkpara 20201108PM
- NEWS:
- runoptLasso(): Optimization using Lasso instead of Kriging (experimental)
babsim.hospital 10.11.8.2
- UPDATES:
- icudata (DIVI) 8.11.2020
- rkidata 8.11.2020
babsim.hospital 10.11.8.0
- CHANGES:
- data download and handling for icudata and rkidata reorganized:
- rkidata and rkidataFull
- icudata and icudataFull
- data download and handling for icudata and rkidata reorganized:
babsim.hospital 10.11.7.0
- CHANGES:
- modelOptimizeHospital() removed
- visualizeGraph() uses checkSimPara()
- UPDATES:
- icudata (DIVI) 7.11.2020
babsim.hospital 10.11.6.12
- UPDATES:
- parameter sets updated (optimization results from 5. Nov. 2020):
- nrwpara
- koelnpara
- obkpara
babsim.hospital 10.11.6.10
- UPDATES:
- icudata DIVI 6.11.2020
babsim.hospital 10.11.6.8
- CHANGES:
- simmerplot mv to man/figures
babsim.hospital 10.11.6.6
- CHANGES:
- simmerplot mv to man/figures
babsim.hospital 10.11.6.4
- CHANGES:
- vignette PDF compacted via tools::compactPDF("vignettes", gs_quality = "ebook")
babsim.hospital 10.11.6.2
- CHANGES:
- cleanup:
- vignettes renamed
- subfolder ForTheExpert
- INTERNAL_DATA.md included in bundeslanddata.R
- INTERNAL_DATA.md removed
- README.Rmd: fig.path = "man/figures/README-" changed to fig.path = ".",
- cleanup:
babsim.hospital 10.11.6.0
- CHANGES:
- rkidata (switched Refdatum <-> Meldedatum) 6.11.2020
babsim.hospital 10.11.5.8
- CHANGES:
- sysdata.rda removed, were replaced by bundeslanddata.rda
babsim.hospital 10.11.5.6
- UPDATE:
- icudata 5.11.2020
babsim.hospital 10.11.5.4
- UPDATE:
- results koelnpara 2020.11.4 PM
babsim.hospital 10.11.5.2
- NEW:
- runopt() accepts argument funEvalsFactor with default value 0
babsim.hospital 10.11.5.0
- CHANGES:
- rkidata (switched Refdatum <-> Meldedatum) 5.11.2020
- switchRkiRefdatumToMeldedatum updated
babsim.hospital 10.11.4.18
- NEW:
- getBestParameter()
- smoothParameter()
babsim.hospital 10.11.4.16
- deutschlandpara 20201103PM
babsim.hospital 10.11.4.14
- runopt() uses
- retries=100
- designControl does not use inequalityConstraint=g anymore
babsim.hospital 10.11.4.12
- CHANGES:
- ggVisualizeIcu() considers theat faelle_covid_aktuell include faelle_covid_aktuell_beatmet, so we substract faelle_covid_aktuell_beatmet
babsim.hospital 10.11.4.10
- CHANGES:
- koelnpara 20201103PM2
- nrwpara 20201103PM2
- deutschlandpara 20201103PM
babsim.hospital 10.11.4.8
- CHANGES:
- obkpara 20201104AM-5
- icudata DIVI 4.11.2020
babsim.hospital 10.11.4.6
- CHANGES:
- rkidata uses Meldedatum
babsim.hospital 10.11.4.4
* CHANGES:
* rkidata as provided by RKI from 4.11.2020
babsim.hospital 10.11.4.2
- BUG (partially fixed):
- TestSimStartDate = "2020-09-20" does not work for OBK data. Use TestSimStartDate = "2020-09-21" instead. Possible reason: not suffient data in obkdata?
babsim.hospital 10.11.4.0
- NEWS:
- runopt() accepts Overlap (= 7)
babsim.hospital 10.11.03.14
- NEWS:
- runopt() accepts TestFieldStartDate = "2020-10-20" and TestSimStartDate = "2020-09-20"
babsim.hospital 10.11.03.12
- CHANGES:
- examples reduced (dontrun)
babsim.hospital 10.11.03.10
- CHANGES:
- runopt() stores results in subfolder results
babsim.hospital 10.11.03.8
- CHANGES:
- runopt() stops if dates are incorrect
babsim.hospital 10.11.03.6
- CHANGES:
- icudata (DIVI) Stand 3.11.2020
babsim.hospital 10.11.03.4
- CHANGES:
- rkidata uses Meldedatum
babsim.hospital 10.11.03.2
- BUGFIX:
- runopt() uses correct configuration
- CHANGES:
- rkidata as provided by RKI
- nowcast vignette: eval = FALSE for all snipplets
babsim.hospital 9.11.03.0
- BUGFIX:
- runopt() uses train and test data
babsim.hospital 9.11.02.2
- BUGFIX:
- runopt() uses corrected data
babsim.hospital 9.11.02.0
- BUGFIX:
- runopt() uses full simData and fieldData
babsim.hospital 8.11.02.10
- CHANGES:
- runoptsynth() accepts data argument
babsim.hospital 8.11.02.08
- CHANGES:
- koelnpara20201102AM-7
babsim.hospital 8.11.02.06
- CHANGES:
- getObkData() accepts data argument
babsim.hospital 8.11.02.04
- UPDATE:
- icudata (DIVI) 2.11.2020
- obkpara 20201102AM-10
babsim.hospital 8.11.02.02
- UPDATE:
- Vignette Nowcast updated
babsim.hospital 8.11.02.00
- UPDATE:
- rkidata (switched to Meldedatum) from Nov 2nd 2020
- NEW:
- Vignette Nowcast
- koelnpara run 20201102AM
babsim.hospital 8.11.01.20
*CHANGES: * extendRki uses median( tail(dataAgg, 7)$Freq)
babsim.hospital 8.11.01.18
- UPDATE:
- obkpara 20201031PM-22
babsim.hospital 8.11.01.16
- NEW:
- ggVisualizeIcu()
- ggVisualizeRki()
babsim.hospital 8.11.01.14
- NEW:
- app has analysis tab
babsim.hospital 8.11.01.12
- CHANGES:
- typos fixed: rkidata uses Meldedatum
babsim.hospital 8.11.01.10
- NEW:
- switchRkiRefdatumToMeldedatum()
- switchRkiMeldedatumToRefdatum()
- rkidata uses Meldedatum
babsim.hospital 8.11.01.8
- CHANGES:
- icudata (DIVI) 1.11.2020
babsim.hospital 8.11.01.6
- CHANGES:
- new plot arrangement for simulations
babsim.hospital 8.11.01.4
- CHANGES:
- ggVisualize functions accept option
simplify. Defaault is true.
- ggVisualize functions accept option
babsim.hospital 8.11.01.2
- CHANGES:
- rkidata
babsim.hospital 8.11.01.0
- NEW:
- App display preview (extended data)
babsim.hospital 7.10.31.18
- NEW:
- function ggVisualizeRkiExtended()
babsim.hospital 7.10.31.16
- NEW:
- function ggVisualizeRkiAge()
babsim.hospital 7.10.31.14
- CHANGES:
- deutschlandpara AM 20201031A-8
babsim.hospital 7.10.31.12
- NEW:
- preparing new function ggVisualizeRkiAge()
babsim.hospital 7.10.31.10
- CHANGES:
- nrwpara20201031A-8
babsim.hospital 7.10.31.8
- CHANGES:
- bundeslanddata (replacement for sysdata.rda)
- bundeslanddata uses ASCII characters only
- bundeslanddata (replacement for sysdata.rda)
babsim.hospital 7.10.31.6
- CHANGES:
- icudata 20201031 update
- obkpara 20201031-17 update
- rkiToBabsimData() handles age and gender
babsim.hospital 7.10.31.4
- CHANGES:
- under preparation: ggVisualizeRkiEvents()
babsim.hospital 7.10.31.2
- CHANGES:
- nrwpara 20201030-26
babsim.hospital 7.10.31.0
- CHANGES:
- obkpara20201031-23
- rkidata
babsim.hospital 7.10.30.2
- CHANGES:
- obkpara 30.10.2020
babsim.hospital 7.10.30.0
- CHANGES:
- new bounds based on info from OBK
babsim.hospital 6.10.30.2
- CHANGES:
- obkpara20201030-16
babsim.hospital 6.10.30.0
- CHANGES:
- icudata 30.10.2020
- rkidata 30.10.2020
- compacted ‘babsim-vignette-RKI-DIVI.pdf’ via tools::compactPDF(gs_quality = "ebook", paths = "/Users/bartz/workspace/babsim.hospital/vignettes")
- BUGFIX:
- getError() fixed and extended
babsim.hospital 5.10.29.18
- CHANGES:
- koelnpara202010262 (required by vignette RKI/DIVI)
babsim.hospital 5.10.29.16
- CHANGES:
- koelnpara20201029-19
babsim.hospital 5.10.29.14
- CHANGES:
- koelnpara20201029-13
babsim.hospital 5.10.29.12
- CHANGES:
- obkdata20201028-122
babsim.hospital 5.10.29.10
- CHANGES:
- obkpara20201028-118
- icudata 29.20.2020
babsim.hospital 5.10.29.8
- CHANGES:
- deutschlandpara and
- nrwpara combined TBB+FR
babsim.hospital 5.10.29.6
- CHANGES:
- deutschlandpara20201028-113
babsim.hospital 5.10.29.4
- CHANGES:
- nrwpara20201028-210
babsim.hospital 5.10.29.2
- CHANGES:
- obkdata20201028-117
- koelnpara20201028-114
babsim.hospital 5.10.29.0
- CHANGES:
- rkidata 29.10.2020
babsim.hospital 5.10.28.26
- CHANGES:
- deutschlandpara20201028-16
babsim.hospital 5.10.28.24
- CHANGES:
- vignette updated
babsim.hospital 5.10.28.22
- CHANGES:
- README.Rmd updated
babsim.hospital 5.10.28.20
- CHANGES:
- app() does not show Bochum
babsim.hospital 5.10.28.18
- CHANGES:
- nrwpara20201028-21
babsim.hospital 5.10.28.16
- CHANGES:
- extendRkiData accepts R0 vector (start, end)
- app implements R0 ranges, e.g., value = c(1.4, 1.5),
babsim.hospital 5.10.28.14
- CHANGES:
- deutschlandpara 20201028-14
babsim.hospital 5.10.28.12
- CHANGES:
- visualizeGraph() uses babsim.hospital::synthpara
babsim.hospital 5.10.28.10
- CHANGES:
- deutschlandpara 20201028-12
babsim.hospital 5.10.28.8
- CHANGES:
- extendRki() first ideas on how to use a dynamic R0 value (only comments)
- app() shows Germany
babsim.hospital 5.10.28.6
- CHANGES:
- deutschlandpara 20201027 (many short runs)
babsim.hospital 5.10.28.4
- CHANGES:
- icudata (DIVI) 28.10.2020
- rkidata 28.10.2020
babsim.hospital 5.10.28.2
- CHANGES:
- owos version
babsim.hospital 5.10.28.0
- CHANGES:
- merged owos+bab10 version
babsim.hospital 5.10.27.4
- CHANGES:
- vignette updated/extended
babsim.hospital 5.10.27.2
- CHANGES:
- code cleanup
- icudata (DIVI) 27.20.2020
babsim.hospital 5.10.27.0
- CHANGES:
- renamed babsim -> babsim.hospital
- moved to OWOS
babsim.hospital 4.10.26.22
- CHANGES: cleanup
babsim.hospital 4.10.26.20
- CHANGES: vignette-rki-dvi sources fixed
babsim.hospital 4.10.26.18
- NEW: koelnpara202010262
babsim.hospital 4.10.26.16
- CHANGES:
- runopt returns reslist
babsim.hospital 4.10.26.14
- CHANGES
- koelnpara 20201026-12
babsim.hospital 4.10.26.12
- NEW
- visualizeRkiEvents() can handle StartDate and Region
babsim.hospital 4.10.26.10
- NEW
- visualizeRkiEvents() to visualize preprocessed RKI data
babsim.hospital 4.10.26.8
- CHANGES:
- getError() reverted
- icuWeight conf$w2 is a vector with default setting: w2 = c(1,10)
babsim.hospital 4.10.26.6
- CHANGES: getError() was rewritten
babsim.hospital 4.10.26.4
- CHANGES: icudata 26.10.2020
babsim.hospital 4.10.26.2
- CHANGES: rkidata 26.10.2020
babsim.hospital 4.10.26.0
- CHANGES: koelnpara 20201025 updated
babsim.hospital 4.10.25.10
- CHANGES: tests run faster
babsim.hospital 4.10.25.8
- NEW: updateParaFile()
babsim.hospital 4.10.25.6
- NEW:
- vignettes added
babsim.hospital 4.10.25.4
- NEW:
- babsim.hospitalconstraints with constraintG()
- icudata 25.20.2020
- runopt() modified
babsim.hospital 4.10.25.2
- CHANGES:
- rkidata 25.10.2020
babsim.hospital 4.10.24.8
- CHANGES: icudata 24.10.2020, bochumdata 20201023
babsim.hospital 4.10.24.6
- CHANGES:
- deutschland, koeln, nrw, obk 202010231
babsim.hospital 4.10.24.4
- CHANGES:
- bochum 2nd run
babsim.hospital 4.10.24.2
- CHANGES:
- rkidata 24.10.2020
babsim.hospital 4.10.24.0
- NEW:
- bochum
babsim.hospital 4.10.23.0
- CHANGES:
- icu
- rki
babsim.hospital 4.10.22.2
- CHANGES:
- getBounds(): upper bound for x1 AmntDaysInfectedToHospital changed from 14 back to 21
babsim.hospital 4.10.22.0
- CHANGES:
- koelnpara
- nrwpara
- obkpara
- rkidata
babsim.hospital 4.10.21.4
- CHANGES:
- rkidata 21.10.2020
- obkpara20201020
- nrwpara (1st run)
- koelnpara (1st run)
- resulceNames, resourceEval in babsim.hospitalrun
babsim.hospital 4.10.21.0
- BUGFIX:
- funOptimizeSim(): Missing conf=conf argument added to call getError(res=res, conf=conf)
babsim.hospital 3.10.20.2
- CHANGES:
- icudata updated 2020-10-20
babsim.hospital 3.10.20.0
- CHANGES:
- getBounds(): upper bound for x1 AmntDaysInfectedToHospital changed from 21 to 14
- English version
babsim.hospital 2.10.20.2
- CHANGES:
- nrwpara 20.1.2020
babsim.hospital 2.10.20.0
- CHANGES:
- rkidata 20.1.2020
babsim.hospital 2.10.19.8
- CHANGES:
- icudata 19.10.2020
babsim.hospital 2.10.19.6
- CHANGES:
- obkpara 19.10.2020
- deutschlandpara 19.10.2020
- rkidata 19.10.2020
- Impressum
babsim.hospital 2.10.19.4
- CHANGES:
- rkidata 19.10.2020
babsim.hospital 2.10.19.2
- CHANGES:
- koelnpara 18.10.2020
babsim.hospital 2.10.19.0
- CHANGES:
- Versionsnummern anhand der Tage
babsim.hospital 2.2.22
- CHANGES:
- berlinpara, koelnpara, magdeburgpara, obkpara
babsim.hospital 2.2.20
- CHANGES:
- nrwpara
babsim.hospital 2.2.18
- CHANGES:
- dividata 18.10.2020 hinzugefuegt
- farben angepasst
- App aktualisiert
babsim.hospital 2.2.16
- CHANGES:
- deutschlandpara update
babsim.hospital 2.2.14
- CHANGES:
- nrwdata update
babsim.hospital 2.2.12
- CHANGES:
- rkidata update
babsim.hospital 2.2.10
- CHANGES:
- koelnpara update
babsim.hospital 2.2.8
- CHANGES:
- icudata fixed
babsim.hospital 2.2.6
- CHANGES:
- Added Berlin and Magdeburg
babsim.hospital 2.2.4
- CHANGES:
- Naming
babsim.hospital 2.2.2
- CHANGES:
- New file structure
babsim.hospital 2.2.0
- CHANGES:
- getIcuBeds() erzeugt intensiveBed statt bed
- getError() uses resource <- conf$ResourceEval
- getDailyMaxResults() loscht nicht mehr die bed Kategorie
-
envToTibble() loscht nicht mehr die bed Kategorie
-
NEW:
- conf$ResourceEval spezifiziert die auszuwertenden Ressourcen, z.B. c("intensiveBed", "intensiveBedVentilation") für DIVI
babsim.hospital 2.1.8
- CHANGES:
- MC Plots added
babsim.hospital 2.1.6
- CHANGES:
- Titel ergaenzt
babsim.hospital 2.1.4
- BUG FIXED
- dailyMaxResults() and envToTibble() can handle empty resources
babsim.hospital 2.1.2
- CHANGES
- Koeln data
babsim.hospital 2.1.0
- NEW
-
Shiny App
-
CHANGES
- ifelse fixed
babsim.hospital 2.0.6
- CHANGES
- data bug fixed in extendRki()
babsim.hospital 2.0.4
- CHANGES
- envToTibble() uses fieldEvent information
babsim.hospital 2.0.2
- NEW
-
envToTibble()
-
CHANGES
- Wahrscheinlichkeiten angepasst
- getDailyMaxResults: bed labels changed * no bed, only intensiveBed and intensiveBedVentilation
babsim.hospital 1.8.2
- CHANGES
- Fixed S4 class problem
babsim.hospital 1.8.0
- NEW
- getMatrixD()
- plotting results
babsim.hospital 1.7.8
- CHANGES
- Data importing and archiving strategy
babsim.hospital 1.7.6
- CHANGES
- Consistent data handling via conf
babsim.hospital 1.7.4
- NEW:
- icu20201001
- rki20201001
babsim.hospital 1.7.2
- CHANGES:
- babsim.hospitalHospital(): sim.repeats bug fix
babsim.hospital 1.7.0
- CHANGES:
-
babsim.hospitalHospital(): new parallel / sequential handling
-
NEW:
- constraint handling (experimental), see runQuickConstraints.R
babsim.hospital 1.6.4
- CHANGES:
- risk factor B adapted
babsim.hospital 1.6.2
- CHANGES:
- updateMatrixP(): value check for risk multiplier
babsim.hospital 1.6.0
- CHANGES:
- train/test data
- weighted error
- test script runICU100TrainTest.R
babsim.hospital 1.5.6
- CHANGES:
- parallel option works again
babsim.hospital 1.5.4
- CHANGES
- otimization interface can be used with SPOT
babsim.hospital 1.5.2
- NEW
- risk attributes are used to update probabilities
babsim.hospital 1.5.0
- NEW
- risk attributes implemented
babsim.hospital 1.4.2
Merged Versions TBB+FR
babsim.hospital 1.4.0
Testing, not stable version.
- CHANGES
- new traj hadling in babsim.hospitalHospital()
babsim.hospital 1.3.10
- NEW
- getRkiData() preprocesses raw RKI data
- getRkiRisk() determines risk for RKI patients based on age and gender
babsim.hospital 1.3.8
- CHANGES
- trajList is generated from with babsim.hospitalHospital()
babsim.hospital 1.3.6
- NEW
- Parameter extended: risk factors are included
babsim.hospital 1.3.4
- NEW
- Preparing risk calculations for RKI data
babsim.hospital 1.3.2
- CHANGES
- getRealBeds() uses resource=c("bed", "intensiveBed", "intensiveBedVentilation") as default parameter
babsim.hospital 1.3.0
- NEW:
- data structures:
- simData
- fieldData
babsim.hospital 1.2.22
- NEW:
- getConfFromData()
babsim.hospital 1.2.20
- CHANGES:
- ICUBeds20200822 geloescht
babsim.hospital 1.2.18
- NEW:
- Aktualisierte RKI/DIVI Daten
babsim.hospital 1.2.16
- CHANGES:
- getDailyMaxResults() uses conf list
babsim.hospital 1.2.14
- CHANGES:
- getRealBeds() handles getIcuBeds()
babsim.hospital 1.2.12
- CHANGES:
- getError() handles getIcuError()
- getIcuError() deleted
babsim.hospital 1.2.10
- CHANGES:
- getError() simplified
babsim.hospital 1.2.8
- CHANGES:
- getRealBedsOLD() removed
- simulateHospital() removed, use the following code instead: x <- rep(0.2,30) para <- mapXToPara(x) conf <- babsim.hospitalToolsConf() res <- modelResultHospital(para=para, conf=conf) getError(res) p <- plotDailyMaxResults(res) print(p)
babsim.hospital 1.2.6
- NEWS:
- getBounds()
-
Sim100 data
-
CHANGES
- Default values of x15 and x19 modified
- Default values of DurationInfected2Hospital (shift = 1) changed
babsim.hospital 1.2.4
- NEWS:
- mapXToPara (replaces simulateHospital)
- synthSimCovid20201130: synthetic data
-
synthBeds20201130: synthetic data
-
CHANGES:
- babsim.hospitalToolsConf implements
- simulationData = babsim.hospital::dataCovidBeds20200624,
- fieldData = babsim.hospital::GABeds220200624
babsim.hospital 1.2.3*
- CHANGES:
- babsim.hospitalToolsConf has the following additional list entries: * logLevel (int) 0 = no logging, 1 = logging. Default: 0. * maxCapacity (num) Maximum capacity used for babsim.hospitalHospital resources. Default: 1e6. * dataset (chr) Can be "GA" or "ICU". Default: "GA". * infectionDates List with the following entries: * StartDate (chr) Start date of the infection data, first day. Default: "2020-03-03" * EndDate (chr) End date of the infection data, last day. Default: "2020-06-24" * bedDates List with the following entries: * StartDate (chr) Start date of the bed data, first day. Default: "2020-03-03" * EndDate (chr) End date of the bed data, last day. Default: "2020-06-24" * predictionDates List with the following entries: * StartDate (chr) Start date of the prediction interval, first day. Default: "2020-03-03" * EndDate (chr) End date of the prediction interval, last day. Default: "2020-06-24"
babsim.hospital 1.2.1
- CHANGES:
- Aktualisierung der Ergebnisdateien der Simulationslaeufe
- bart20h.Rmd aktualisiert
babsim.hospital 1.2.0
- CHANGES:
- Tests fur getError und getIcuError hinzugefuegt
babsim.hospital 1.1.10
- CHANGES:
- getDailyMaxResults errors fixed (simStartDay anstelle von StartDay)
- test.getDailyMaxResults hinzugefuegt fuer GA und ICU
babsim.hospital 1.1.8
- CHANGES
- getIcuBeds benötigt kein Start- und EndDate als eigenstaendige Parameter
- getRealBeds erzeugt time Information, die mit 0 (und nicht, wie vorher, bei 1) anfaengt
- getIcuBeds erzeugt time Information, die mit 0 (und nicht, wie vorher, bei 1) anfaengt
-
checkSimPara verwendet minDays = 1e-6 statt minDays = 0
-
NEWS:
-
test.bed testet ICU Betten
-
ERRORS:
- Das R-Skript source("runICU1000NotParallel.R") (Verzeichnis babsim.hospital/bart20h/Runs.d) stuerzt mit der folgenden Fehlermeldung ab: Error: 'patient112184' at 107.42 in [Branch]->Timeout->[Release]: missing value (NA or NaN returned) In addition: Warning message: qgamma(u, shape = shape, rate = rate) : NaNs produced
babsim.hospital 1.1.4
- CHANGES
- babsim.hospitalHospitalControl renamed to babsim.hospitalHospitalPara
- babsim.hospitalHospitalPara uses minVal instead of 0.0 to avoid division by zero
- ICU Betten verwenden Date Format: ICUBeds20200822$date <- as.Date(ICUBeds20200822)
- rkiTobabsim.hospitalArrivals uses time label: return(data.frame(time = getArrivalTimes( rkiAgg$Freq ))) instead return(data.frame(getArrivalTimes( rkiAgg$Freq )))
- conf$maxCapacity = 1e6 (increased from 1e4)
- getArrivalTimes verwendet RNGkind("Wich")
-
rtgamma verwendet RNGkind("Wich")
-
NEW:
- test.bed Bettendaten werden getestet
-
test.trajectories hat einen Test fuer riesige Datenmengen (bundesweite COVID-19 Faelle)
-
ERRORS:
- Bei grossen Datensaetzen (> 200.000): arrival Times nicht eindeutig, z.B.: dim(arrivalTimes) ergibt 230187 aber dim(unique(arrivalTimes)) ergibt 230186. Daher : RNGkind("Wich") . sum(duplicated(runif(1e8))) >0, aber RNGkind("Wich") sum(duplicated(runif(1e8))) == 0. Siehe: https://stackoverflow.com/questions/51425656/why-does-runif-have-less-unique-values-than-rnorm
babsim.hospital 1.1.2
- CHANGES:
- New: arrivalTimes <- c(arrivalTimes, runif(xDaily[i],0,1) + (i -1) )
-
Old: arrivalTimes <- c(arrivalTimes, runif(xDaily[i],0,1) + i )
-
ERRORS:
- source("runGA1000.R") ergibt (packageVersion("SPOT") ‘2.0.62’):
-
Warnmeldungen: 1: In duplicateAndReplicateHandling(xnew, x, lower, upper, control) : SPOT created a duplicated solution. This can be due to early convergence or bad configuration. Duplicate is replaced by random solution. 2: In duplicateAndReplicateHandling(xnew, x, lower, upper, control) : SPOT created a duplicated solution. This can be due to early convergence or bad configuration. Duplicate is replaced by random solution. 3: In duplicateAndReplicateHandling(xnew, x, lower, upper, control) : SPOT created a duplicated solution. This can be due to early convergence or bad configuration. Duplicate is replaced by random solution. 4: In duplicateAndReplicateHandling(xnew, x, lower, upper, control) : SPOT created a duplicated solution. This can be due to early convergence or bad configuration. Duplicate is replaced by random solution.
-
source("runICU1000.R") ergibt:
- Error in UseMethod("get_mon_resources", unlist(list(.envs))[[1]]) : no applicable method for 'get_mon_resources' applied to an object of class "character" In addition: Warning message: In mclapply(1:simRepeats, function(i) { : scheduled core 1 encountered error in user code, all values of the job will be affected
babsim.hospital 1.1.0
- CHANGES:
- babsim.hospitalHospitalTrajectories() benutzt getDecision()
babsim.hospital 1.0.46
- COMMENT:
-
ICU data does crash
-
CHANGES:
-
getDailyMaxResults() clean up
-
NEW:
- getDecision() to prepare babsim.hospital 1.1.0
- more test functions
babsim.hospital 1.0.44
- NEW:
- checkSimPara()
- ensureRangeOpen()
-
weitere Tests in test.tools
-
CHANGES:
- maxCapacity wird in conf und nicht mehr in para gespeichert
- modelResultHospital korrigiert para Werte mittels checkSimPara
babsim.hospital 1.0.42
- NEW:
- data GABeds20200624
- data dataICUBeds20200821
- function getRealBedsOLD (compatibility)
- test rtgamma
*CHANGES * function getIcuBeds simplified * function getRealBeds simplified
babsim.hospital 1.0.40
- CHANGES:
-
modelResultHospital uses rkiTobabsim.hospitalArrivals
-
NEW
- function rkiTobabsim.hospitalArrivals
babsim.hospital 1.0.38
- CHANGES:
- rtgamma implements a shift 8Translation) parameter and alpha upper quantile of gamma distribution. All values above alpha are truncated.
babsim.hospital 1.0.36
- NEW:
-
babsim.hospitalToolsConf to configure conf
-
CHANGES:
- babsim.hospitalHospitalPara list speichert GammaShapeParameter
- funOptimizeSim erzeugt para mit GammaShapeParameter
- Durchgaengig conf und para
babsim.hospital 1.0.34
- NEWS:
- resRki data added
- Abstract vorbereitet
- babsim.hospital benutzt trunkierte Gamma Verteilung mit 0.95 Grenze
- experiment runSPOTICU1000TruncDist
babsim.hospital 1.0.32
- CHANGES: gamma dist
babsim.hospital 1.0.30
- CHANGES:
- funWrapOptimize: new parameter
babsim.hospital 1.0.28
- NEW:
- getIcuBeds()
- getDailyMaxResults() has new parameter ICU
babsim.hospital 1.0.26
- NEW:
- readCsvRecursively()
- getDiviData()
- Data: icu20200822 und rki 20200822
babsim.hospital 1.0.24
- Cleanup:
- babsim.hospitalHospital does not use argument GammaShapeParameter
- babsim.hospitalHospitalTrajectories does not use arguments arrivalTimes and simRepeats
- babsim.hospitalHospitalTrajectories used truncated Gamma dist. (rtgamma) Max. val = alpha x mean value
- DurationInfected2Hospital hat eine untere Grenze (min = 2 Tage)
- Ergebnisse von runSpot500b hinzugefügt
babsim.hospital 1.0.22
- Grundgerüst des Reports bart20h erstellt.
babsim.hospital 1.0.20
- Report bart20h bis SPOT Aufruf (Optimierung)
babsim.hospital 1.0.18
- new: postprocessEnvs()
babsim.hospital 1.0.16:
- new: Dokumentation und Tests funktionieren mit babsim.hospitalHospitalTrajectories()
babsim.hospital 1.0.14
- new: babsim.hospitalHospitalTrajectories
babsim.hospital 1.0.12
- Last version before "cleanup"
babsim.hospital 1.0.10
- New state "healthy" added
- Documentation and new examples
babsim.hospital 1.0.8
- Only cleanup. Added res250.rda
babsim.hospital 1.0.7
- new option parallel in babsim.hospitalHospitalPara
babsim.hospital 1.0.6
- new data dataCovidBeds20200624
babsim.hospital 1.0.4
- SPOT optimization as an example
babsim.hospital 1.0.0:
- Initial version
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