plotMZ: Plotting compounds selected masses

In baitmet: Library Driven Compound Profiling in Gas Chromatography - Mass Spectrometry Data

Description

Plots the chromatophic profiles of the masses (selective) for each compound.

Usage

plotMZ(Experiment, AlignId, mz.ind=1, per.class=T, aligned=FALSE, xlim=NULL)

Arguments

Experiment	A 'MetaboSet' S4 object containing the experiment after the masses have been quantified by quantSM() function.
AlignId	the Id identificator for the compound to be shown.
mz.ind	Integer. the -th selective mass, the 1 (st) selective mass, the 2 (nd) selective mass, etc..
per.class	logical. if TRUE the profiles are shown one color per class, if FALSE one color per sample.
aligned	logical. if TRUE the profiles (masses) are shown aligned for a better visual comparison, if FALSE they are shown as they are.
xlim	x axsis (retention time) limits (see plot.default).

Author(s)

Xavier Domingo-Almenara. [e-mail]

See Also

mzList, quantSM

baitmet documentation built on May 2, 2019, 11 a.m.